Pairwise Alignments

Query, 412 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 429 a.a., diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  210 bits (534), Expect = 7e-59
 Identities = 135/376 (35%), Positives = 206/376 (54%), Gaps = 12/376 (3%)

Query: 44  LPYILFLIALTVAHIFKQSRIAMVAMTMLLAYWLIQIRLQ----TPLTVNSTMLELIMLS 99
           LP +L L+   +  ++ + R   + + + L Y+L+             ++   L   + S
Sbjct: 42  LPTVLLLLGGALCLMYGRIRECFLLLCVYLVYFLLDTHADYYRDRGSLLDDAALTFHLCS 101

Query: 100 LLLPVACFLPYAYKNAGLFSKSFLSYLAILLLFIFWAWLTQLHIGETDHSSLTEGIFFVV 159
           LLLP+   L   ++     ++  L+  A+L      A        +  H+ L   I +  
Sbjct: 102 LLLPLLYGLFGVWRERSHLAQEGLARAAVLFAVGIVALALARRFPDALHAWLVV-IRWPA 160

Query: 160 PQISRLPLVVVAYLVALAGIAAISVLTRNQILDVVVYSSIVLSMNAFVLFHVPYISTIMF 219
            Q   L L+ +AY   LA +  +++    Q       + IV  +   ++    +      
Sbjct: 161 LQADWLQLIQLAYPAFLAALVLLTMQYLRQPRPSHA-AQIVGLVGVLLMLPQTFSRGAAL 219

Query: 220 TLSGLLILVYLISA----GYEMAFNDPLTQIPGRQALDQDLKHIGRKFTLAMLDVDHFKK 275
            +    +L+ L++A     Y MAF D LT +PGR+AL++ L+ +GR++ LAM DVDHFK+
Sbjct: 220 NVLSSHVLLMLVAAIAHEAYLMAFRDELTGLPGRRALNERLQRLGRQYVLAMADVDHFKR 279

Query: 276 FNDTYGHDTGDDVLRLVASRLREINGKARVYRYGGEEFSIIYKGKLAKEVLPFIEALRQD 335
           FNDTYGHD GD VL++VASRLR+I G  R YRYGGEEF++++ G+  +E LP +EA+RQ 
Sbjct: 280 FNDTYGHDVGDQVLKMVASRLRKIGGGGRAYRYGGEEFTLVFSGRSVEECLPHLEAIRQS 339

Query: 336 IESYELVIRDTNQRPKSHAEGAKKRSRKSNSDIVTITISIGVCDSE-LYRHPIEALKAAD 394
           +ESY L +RD + RPK    G   R + S S  V++TISIGV + +   R P E +KAAD
Sbjct: 340 VESYALQLRDASSRPKDDRLGRTARGKVSTSQ-VSVTISIGVAERQGEQRTPDEVIKAAD 398

Query: 395 GALYKAKQAGRNCVKV 410
            ALY AK+AGRNCV+V
Sbjct: 399 QALYGAKKAGRNCVRV 414