Pairwise Alignments

Query, 412 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 87.8 bits (216), Expect = 4e-22
 Identities = 62/185 (33%), Positives = 92/185 (49%), Gaps = 27/185 (14%)

Query: 236 EMAFNDPLTQIPGRQALDQDLKHIGRK-------FTLAMLDVDHFKKFNDTYGHDTGDDV 288
           +++  D LT I  R+  DQ L+    +        +L MLD+DHFK FND YGH  GDD 
Sbjct: 171 KLSNTDGLTNIGNRRLFDQMLQKEWSRGQRNNTPLSLIMLDIDHFKLFNDHYGHLAGDDC 230

Query: 289 LRLVASRLREINGKA--RVYRYGGEEFSIIYKGKLAKEVLPFIEALRQDIESYELVIRDT 346
           L+++A+ L +   +A   V RYGGEEF I+      +  L   + + Q I+S  +     
Sbjct: 231 LKMLANGLSQSGRRAGELVARYGGEEFVILLPNTDLQTALDTAKHVHQLIQSLAI----- 285

Query: 347 NQRPKSHAEGAKKRSRKSNSDIVTITISIGVCDSELYRHPIEALKAADGALYKAKQAGRN 406
                 H         K+N  IVT+++ +         + +E +  AD ALY AK AGRN
Sbjct: 286 -----PHI--------KTNLGIVTVSVGVACLLPSDKHNALELVHQADTALYLAKSAGRN 332

Query: 407 CVKVA 411
           C++ A
Sbjct: 333 CIRSA 337