Pairwise Alignments

Query, 412 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 625 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 81.6 bits (200), Expect = 6e-20
 Identities = 63/186 (33%), Positives = 88/186 (47%), Gaps = 32/186 (17%)

Query: 236 EMAFNDPLTQIPGRQALDQDL---KHIGRK----FTLAMLDVDHFKKFNDTYGHDTGDDV 288
           E +  D LT +  R A D+ L     I R+      L MLD+D FK  ND +GH  GD  
Sbjct: 452 EQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIALLMLDIDRFKSINDQFGHLAGDQA 511

Query: 289 LRLVASRLREINGKAR--VYRYGGEEFSIIYKGKLAKEVLPFIEALRQDIESYELVIRDT 346
           L+L+A  L++   +    V R+GGEEF+II     A   L   E++R  +    L     
Sbjct: 512 LKLIAQTLQQHLKRPTDLVSRFGGEEFAIILPNTTADGALQVAESIRDTVSCIGLT---- 567

Query: 347 NQRPKSHAEGAKKRSRKSNSDIVTITISIGVCDSELY--RHPIEALKAADGALYKAKQAG 404
                   EG            + +T+SIGV    +   +H  E L+ AD ALY+AK +G
Sbjct: 568 -------WEGKP----------IPLTVSIGVSADVIMNEQHSTELLEQADKALYQAKNSG 610

Query: 405 RNCVKV 410
           RN VK+
Sbjct: 611 RNQVKL 616