Pairwise Alignments

Query, 412 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 89.0 bits (219), Expect = 2e-22
 Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 23/173 (13%)

Query: 241 DPLTQIPGRQALDQDLKHIGRKFT----LAMLDVDHFKKFNDTYGHDTGDDVLRLVASRL 296
           D LT    R+A D D+  +  +      L ++D+DHFK FND YGH  GD VL+ VA RL
Sbjct: 182 DALTGCLNRRAFDADIAGMIAQAPEGTCLILVDIDHFKAFNDNYGHQLGDQVLKAVAKRL 241

Query: 297 RE-INGKARVYRYGGEEFSIIYKGKLAKEVLPFIEALRQDIESYELVIRDTNQRPKSHAE 355
           +E     +++YR+GGEEF+II      +      EA+R+ +E  +L ++D          
Sbjct: 242 QEACRDGSKLYRFGGEEFAIIVPKSQLRITRQLAEAMRRGLE--KLCLKD---------- 289

Query: 356 GAKKRSRKSNSDIVTITISIGVCDSELYRHPIEALKAADGALYKAKQAGRNCV 408
                 R+ +  +  IT S GV   +  +  ++ ++  D  LY+AK+ GRN V
Sbjct: 290 ------RRKDQLVDNITASFGVAQWQERQSVVQLIEKTDKLLYEAKRLGRNRV 336