Pairwise Alignments

Query, 412 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 87.0 bits (214), Expect = 7e-22
 Identities = 61/180 (33%), Positives = 84/180 (46%), Gaps = 25/180 (13%)

Query: 238 AFNDPLTQIPGRQALDQDLK-HIGR------KFTLAMLDVDHFKKFNDTYGHDTGDDVLR 290
           A  D LT +  R+A +  ++ HI R      + +L ++D+D FK FNDTYGH  GD VL 
Sbjct: 156 AMTDQLTSLHNRRAYEIAIQDHIHRAEEQHTRCSLLLIDIDRFKVFNDTYGHQVGDKVLA 215

Query: 291 LVASRLRE-INGKARVYRYGGEEFSIIYKGKLAKEVLPFIEALRQDIESYELVIRDTNQR 349
            VA  L++ + G   V RYGGEEF ++       + L   E LR  I    L I      
Sbjct: 216 YVALALKQCVRGDDFVARYGGEEFVVLLPNTHFHDALQVAETLRGRISERRLAI------ 269

Query: 350 PKSHAEGAKKRSRKSNSDIVTITISIGVCDSELYRHPIEALKAADGALYKAKQAGRNCVK 409
                       +     +  IT+SIG+   +           AD ALY+AK  GRNCV+
Sbjct: 270 -----------GKDKKLSLGAITVSIGLASLQKGDDAETLFSRADKALYEAKSDGRNCVR 318