Pairwise Alignments

Query, 412 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., sensory box/GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 96.3 bits (238), Expect = 1e-24
 Identities = 71/228 (31%), Positives = 112/228 (49%), Gaps = 38/228 (16%)

Query: 195 VYSSIVLSMNAFVLFHVPYISTIMFTLSGLLILVYLISAGYE----MAFNDPLTQIPGRQ 250
           +Y ++ L   A +   + +IS I++ ++ + +    + A  E    ++  D LTQ+  R+
Sbjct: 109 MYQNVTLLPLASLTGKITHISVIVYDVTDIAVNKLQLKAANEQLERLSQTDGLTQLHNRR 168

Query: 251 ALDQDLKHIGRKF-------TLAMLDVDHFKKFNDTYGHDTGDDVLRLVASRL-REINGK 302
              Q L+H    +       +L M+D+DHFK  NDTYGH  GD V++ +A  L   +   
Sbjct: 169 HWQQCLEHEYDLYARYSGIASLVMIDIDHFKNINDTYGHLAGDKVIQHIAHILSHSLRET 228

Query: 303 ARVYRYGGEEFSIIYKGKLAKEVLPFIEALRQDIESYELVIRDTNQRPKSHAEGAKKRSR 362
               RYGGEEF+++       + L F E LR+ I S  +V            EG K    
Sbjct: 229 DCAGRYGGEEFAVVMPSTCGADALNFTERLREKIASSTVVY-----------EGLK---- 273

Query: 363 KSNSDIVTITISIGVCDSELYRHPIEA---LKAADGALYKAKQAGRNC 407
                 + +T+S+GVC  EL +H   +   +  +D ALY+AKQ GRNC
Sbjct: 274 ------IKVTVSLGVC--ELGKHISSSSSWISCSDKALYEAKQKGRNC 313