Pairwise Alignments

Query, 412 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., diguanylate cyclase with GAF sensor (RefSeq) from Shewanella sp. ANA-3

 Score = 89.7 bits (221), Expect = 1e-22
 Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 42/218 (19%)

Query: 210 HVP------YISTIMFTLSGLLILVYLISAGYEM---AFNDPLTQIPGRQALDQDLK--- 257
           HVP       IS++      ++ ++ L   G ++   +  D LT +  R+A D   +   
Sbjct: 129 HVPKQLNQRQISSLQALSRQVIAILELKKVGEQLHNTSMTDALTGVNNRRAFDLKFEAEF 188

Query: 258 ----HIGRKFTLAMLDVDHFKKFNDTYGHDTGDDVLRLVASRLREINGKARVY-RYGGEE 312
                 G+ F LA++D+DHFK FND+YGH  GD+ L  VA+  +  +     + RYGGEE
Sbjct: 189 ARWQRTGQSFVLALIDIDHFKSFNDSYGHAAGDEALSQVAALFQRHSRNYDFFARYGGEE 248

Query: 313 FSIIYKGKLAKEVLPFIEALRQDIESYELVIRDTNQRPKSHAEGAKKRSRKSNSDIVTIT 372
           F +I  G         +E LR  + ++E ++R                          +T
Sbjct: 249 FVLILPGTDTASANKTLEKLRLVVANHEWLLRQ-------------------------LT 283

Query: 373 ISIGVCDSELYRHPIEALKAADGALYKAKQAGRNCVKV 410
           +SIG+  ++L+    + L+ AD  LYKAK  GRN   V
Sbjct: 284 VSIGLASADLFDDKKQLLEVADQMLYKAKTQGRNQTSV 321