Pairwise Alignments

Query, 469 a.a., sensor domain-containing diguanylate cyclase from Vibrio cholerae E7946 ATCC 55056

Subject, 932 a.a., extracellular solute-binding protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  117 bits (294), Expect = 1e-30
 Identities = 109/445 (24%), Positives = 194/445 (43%), Gaps = 36/445 (8%)

Query: 40  TLTIANSKAWKPYSYLDEQGQPSGILIDFWLAFGEANHVDIE-FQLMDWNDSLEAVKLGK 98
           TL +   + W P  ++DEQG  +G+  D          ++I+     +W+D + A+  G 
Sbjct: 496 TLRMGFLENWGPMEFVDEQGNFAGVNADIAQMMEAMLGIEIQPVPFKEWSDLISALAKGN 555

Query: 99  SDVQAGLIRSASRLAYLDFAEPLLTIDTQLYVHRTLLGDKLDTL----LSGAINVSLGVV 154
            D+   + ++A R   + ++EP        +     L   L+++    L       L VV
Sbjct: 556 IDLAGSVAKTAEREGQMGYSEPY-------WPSAWALVSPLESVTVFNLEQLEGQRLAVV 608

Query: 155 KGGFEQEFMQREYPQLKLIEYANNELMMSAAKRRELDGFVADTQVANFYIVVSNGAKDFT 214
           +G      +  EYP +KL+   +++  +      + D F+         +    GA  + 
Sbjct: 609 EGYQIISRLMAEYPGIKLVLVPDSQSGLQTVASGKADVFLEKVVT----VASQLGAGQYQ 664

Query: 215 PVKF-----LYSEELRPAVAKGNRDLLEQVEQGFAQLSSNEKNRILSRWVHIE-----TI 264
            +K         ++   AV+  + +LL  + +  A+L       I SRWV I+       
Sbjct: 665 QLKMSLLADFADQKSHIAVSAKHSELLPFINRVIAKLDKARVQEIYSRWVDIKLDTGLVR 724

Query: 265 YPRYLMPI-LASGLLLSIVIYTLQLRRTVRLRTQQLEEANQKLSYLAKTDSLTDIANRRS 323
           Y RY+  + +A  LL  +V+    + R ++   Q  +EA  ++++LA  D LT + NR  
Sbjct: 725 YQRYMKGVAIALALLTLLVLVITVINRRLKGEIQARKEAESRIAHLASHDPLTGLPNRML 784

Query: 324 FFEHLEAEQT----RSGSLTLMVFDIDDFKTINDRFGHGAGDNAICFVVGCVRQALASDT 379
             + L+              L+  D+D FK IND  GH  GD A+  V   + +A+    
Sbjct: 785 LDDRLKQATLFHCREQSKFALLFVDLDGFKEINDSEGHVTGDAALVKVANLLDEAVRKSD 844

Query: 380 YFARIGGEEFAIVA-RGKNAEESQQLAERICQRVAEKKWVVNAQHSLSLTISLGCAFYLH 438
             AR GG+EF ++  R  + +   Q+AE +  R+ E   +   + +L L+ S+G A +  
Sbjct: 845 TVARFGGDEFVVLLNRIHDLDSVCQVAETLIARIGEPLNI--GKKTLKLSASIGIAIFPS 902

Query: 439 PA-RPFSL-HDADSLMYEGKRNGKN 461
            +  P  L   AD +MY  K+ G N
Sbjct: 903 DSDNPIGLMQKADKMMYFAKQAGGN 927



 Score =  102 bits (255), Expect = 4e-26
 Identities = 69/248 (27%), Positives = 120/248 (48%), Gaps = 10/248 (4%)

Query: 16  KLFLLLMIAWPLLFGSMSEAVERQTLTIANSKAWKPYSYLDEQGQPSGILIDFWLAFGEA 75
           KL L L     LL  S+  A E+  + +    ++ P+ +LD+ G+P G+L++ W  +   
Sbjct: 2   KLILRLFFFLSLLLPSVLHASEKPLVLVMGEDSY-PFQFLDDDGEPQGLLVELWKEWSRV 60

Query: 76  NHVDIEFQLMDWNDSLEAVKLGKSDVQAGLIRSASRLAYLDFAEPLLTIDTQLYVHRTLL 135
           N   + F    W DS+  ++ G++DV  G+  +  R A   FA  +  ++T +Y+H+ L 
Sbjct: 61  NRRPVVFVGRVWRDSVAQLEDGRADVHLGMAINPEREARFAFANAISDVNTYVYLHKQLQ 120

Query: 136 GDKLDTLLSGAINVSLGVVKGG-FEQEFMQREYPQLKLIEYANNELMMSAAKRRELDGFV 194
           G    T L       +G+V+G  FEQE   R+ P L    +   + ++ AA R EL  F 
Sbjct: 121 G---RTKLEELQPFQIGIVQGSTFEQELSSRQ-PGLVFRYFPTRDSLLEAAYRGELVAFA 176

Query: 195 ADTQVANFYIVVSNGAKDFTPVK---FLYSEELRPAVAKGNRDLLEQVEQGFAQLSSNEK 251
                     +    A +F P+     +   +L PAV KGN  L+ ++ +GFA ++ +  
Sbjct: 177 GMEGYMRDQALQQKLAAEF-PINTRVLVRETKLHPAVRKGNNALIREINEGFANVADDFI 235

Query: 252 NRILSRWV 259
            ++  RW+
Sbjct: 236 RKLERRWL 243



 Score = 72.8 bits (177), Expect = 5e-17
 Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 6/224 (2%)

Query: 37  ERQTLTIANSKAWKPYSYLDEQGQPSGILIDFWLAFGEANHVDIEFQLMDWNDSLEAVKL 96
           ++  L IA     +P+  L   GQP G+ +D W  + E   + I F   D N SLE V+ 
Sbjct: 248 QQSGLAIAMQLGVEPFVDLGGDGQPHGLYVDIWRLWSEKTGIPINFIPGDMNGSLEDVRS 307

Query: 97  GKSDVQAGLIRSASRLAYLDFAEPLLTIDTQLYVHRTLLGDKLDTLLSGAINVSLGVVKG 156
           G++DV  G   S      L  A  + TI ++L+    L GD+    L       LGV   
Sbjct: 308 GRADVHIGYPESDDMNTGLYRAWHMYTIKSRLF----LYGDQSHD-LDALKGKRLGVFPT 362

Query: 157 GFEQEFMQREYPQLKLIEYANNELMMSAAKRRELDGFVADTQVANFYIVVSNGAKDFTPV 216
                 ++   P  ++  Y   + M++A  + ++ GFVA       Y++++    +F  V
Sbjct: 363 APYVAALKAALPNTQIRFYQGMDEMLTAVHQGDIVGFVAAAAWTQHYLLLNRSWSEFHQV 422

Query: 217 KFL-YSEELRPAVAKGNRDLLEQVEQGFAQLSSNEKNRILSRWV 259
             L +  E+   + +G++ L  ++  GF  +   E   I  +W+
Sbjct: 423 PSLEFDTEIYALIRQGDQGLANRIASGFNMIDWKELADIEQKWM 466