Pairwise Alignments

Query, 469 a.a., sensor domain-containing diguanylate cyclase from Vibrio cholerae E7946 ATCC 55056

Subject, 625 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 96.7 bits (239), Expect = 2e-24
 Identities = 69/189 (36%), Positives = 103/189 (54%), Gaps = 17/189 (8%)

Query: 285 TLQLRRTVRLRTQQLEEANQKLSYLAKTDSLTDIANRRSFFEHLEAE----QTRSGSLTL 340
           TL+L  T+R    +L E NQKL+  +  DSLT + NR +F + L AE    + +   + L
Sbjct: 433 TLELEITLR----ELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIAL 488

Query: 341 MVFDIDDFKTINDRFGHGAGDNAICFVVGCVRQALASDT-YFARIGGEEFAIVARGKNAE 399
           ++ DID FK+IND+FGH AGD A+  +   ++Q L   T   +R GGEEFAI+     A+
Sbjct: 489 LMLDIDRFKSINDQFGHLAGDQALKLIAQTLQQHLKRPTDLVSRFGGEEFAIILPNTTAD 548

Query: 400 ESQQLAERICQRVA--EKKWVVNAQHSLSLTISLGCAFYLHPARPFS---LHDADSLMYE 454
            + Q+AE I   V+     W       + LT+S+G +  +      S   L  AD  +Y+
Sbjct: 549 GALQVAESIRDTVSCIGLTW---EGKPIPLTVSIGVSADVIMNEQHSTELLEQADKALYQ 605

Query: 455 GKRNGKNQV 463
            K +G+NQV
Sbjct: 606 AKNSGRNQV 614