Pairwise Alignments

Query, 469 a.a., sensor domain-containing diguanylate cyclase from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., extracellular solute-binding protein, family 3/GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  613 bits (1580), Expect = e-180
 Identities = 303/458 (66%), Positives = 369/458 (80%)

Query: 9   MDHRFSTKLFLLLMIAWPLLFGSMSEAVERQTLTIANSKAWKPYSYLDEQGQPSGILIDF 68
           M++RF+  L  +L+I   LL  S+  A ERQ L IANSKAWKPYSY+DEQG+PSGILID 
Sbjct: 1   MNYRFAQCLSCILLILCTLLSSSIGVAAERQKLIIANSKAWKPYSYIDEQGKPSGILIDL 60

Query: 69  WLAFGEANHVDIEFQLMDWNDSLEAVKLGKSDVQAGLIRSASRLAYLDFAEPLLTIDTQL 128
           W+A+G+AN+VDIEFQLMDWNDSL AVK GK+D+ AGLIRS  RL YLDF EPLL IDTQL
Sbjct: 61  WIAYGQANNVDIEFQLMDWNDSLLAVKSGKADIHAGLIRSPVRLEYLDFDEPLLEIDTQL 120

Query: 129 YVHRTLLGDKLDTLLSGAINVSLGVVKGGFEQEFMQREYPQLKLIEYANNELMMSAAKRR 188
           Y+H+TLLGDKL  LL+G ++ ++GVVKGGFEQEF QR +PQL LIEY +N+LMM AAKR 
Sbjct: 121 YMHQTLLGDKLQDLLAGRLDTAVGVVKGGFEQEFAQRHFPQLSLIEYIDNDLMMQAAKRG 180

Query: 189 ELDGFVADTQVANFYIVVSNGAKDFTPVKFLYSEELRPAVAKGNRDLLEQVEQGFAQLSS 248
           ELD F+AD QV NFYI+V+NGAK+F P +FLYSE LRPAV KGN+ LL Q+ QGF +L++
Sbjct: 181 ELDAFIADAQVGNFYILVANGAKEFMPAQFLYSEPLRPAVRKGNQALLSQINQGFKKLNT 240

Query: 249 NEKNRILSRWVHIETIYPRYLMPILASGLLLSIVIYTLQLRRTVRLRTQQLEEANQKLSY 308
            EKNRILSRW+HIET+YPRYL+P LA+G+L + + YTLQLRRTVR+RT+QLE+AN KL+ 
Sbjct: 241 QEKNRILSRWIHIETVYPRYLIPALAAGILSAGLFYTLQLRRTVRIRTRQLEDANHKLTL 300

Query: 309 LAKTDSLTDIANRRSFFEHLEAEQTRSGSLTLMVFDIDDFKTINDRFGHGAGDNAICFVV 368
           LA+TDSLT I NR  FF  L   Q  + SLTL+VFDIDDFK+IND +GH AGDNAIC + 
Sbjct: 301 LAQTDSLTGIHNRHYFFNQLSDTQDLASSLTLIVFDIDDFKSINDTYGHSAGDNAICLIT 360

Query: 369 GCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKKWVVNAQHSLSLT 428
            CVR+ L  +  FARIGGEEFAI+AR K+A+ SQQLA+RICQ++A+KK  + +   +SLT
Sbjct: 361 TCVREVLEPEMQFARIGGEEFAILARDKSAQASQQLAKRICQQIAQKKLPLASNTLISLT 420

Query: 429 ISLGCAFYLHPARPFSLHDADSLMYEGKRNGKNQVVFR 466
           +SLGCAFY  P  PF+L+ ADSLMYE KR GKNQ VFR
Sbjct: 421 VSLGCAFYPTPDNPFTLNAADSLMYEAKRKGKNQAVFR 458