Pairwise Alignments

Query, 469 a.a., sensor domain-containing diguanylate cyclase from Vibrio cholerae E7946 ATCC 55056

Subject, 937 a.a., extracellular solute-binding proteins, family 3/GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  104 bits (259), Expect = 1e-26
 Identities = 69/248 (27%), Positives = 120/248 (48%), Gaps = 15/248 (6%)

Query: 20  LLMIAWPLLFGSMSEAVERQT--LTIANSKAWKPYSYLDEQGQPSGILIDFWLAFGEANH 77
           L++I   +L  S   A + QT  L +   +   PY ++D  G+ +G+L+D W  +G+  H
Sbjct: 7   LIVILCCVLSNSTVNASQGQTESLIVVMGEDSFPYQFVDNDGEATGLLVDLWKEWGKRTH 66

Query: 78  VDIEFQLMDWNDSLEAVKLGKSDVQAGLIRSASRLAYLDFAEPLLTIDTQLYVHRTLLGD 137
             + F    WN+SL  ++ GK+ V  G+ ++  R    DFA+ +  + T LY+H++L G 
Sbjct: 67  TPLVFVARHWNESLAQLQQGKAQVHIGMGKTPEREQRFDFADAIANVSTYLYLHKSLQGK 126

Query: 138 KLDTLLSGAINVSLGVVKGGFEQEFMQREYPQLKLIEYANNELMMSAAKRRE------LD 191
           K    +   I   +G+V G   +  ++R  P L    Y + E +++     E      LD
Sbjct: 127 K---NIKELIPYQVGIVSGSSHEAELRRLEPGLVFKYYQSRETLLAGVAAGETVVFAGLD 183

Query: 192 GFVADTQVANFYIVVSNGAKDFTPVKFLYSEELRPAVAKGNRDLLEQVEQGFAQLSSNEK 251
           G++ D   +N  I V+       P+K +   +  PAV KGN +LL +++ GF        
Sbjct: 184 GYLRD-PASNQTIAVNYPLNIRIPIKAM---QFVPAVMKGNTELLNKIKAGFNGFDPKFI 239

Query: 252 NRILSRWV 259
            +   RW+
Sbjct: 240 QQTERRWL 247



 Score = 97.4 bits (241), Expect = 2e-24
 Identities = 101/431 (23%), Positives = 180/431 (41%), Gaps = 26/431 (6%)

Query: 47  KAWKPYSYLDEQGQPSGILIDFWLAFGEANHVDIE-FQLMDWNDSLEAVKLGKSDVQAGL 105
           K W P  + +EQGQ +GI  D      E   + I+     DW   + A++ G   +   +
Sbjct: 508 KQWLPMEFTNEQGQFAGINSDIINMLSEQLGLKIQPIAFDDWQSLIGALRAGDIALAGSI 567

Query: 106 IRSASRLAYLDFAEPLLTIDTQLYVHRTLLGDKLDTLLSGAINVSLGVVKGGFEQEFMQR 165
            ++A R  ++ F++P       +      +       L+G     + VV+G      +  
Sbjct: 568 AQTADRQRHIVFSDPYWPSPWGVVSQLEQVSVFNLAQLAGQ---RVAVVEGYHLVTQLMT 624

Query: 166 EYPQLKLIEYANNELMMSAAKRRELDGFVADTQVANFYIVVSNGAKDFTPVKFLYS---E 222
             P LKL+   N +  + A    + D F+   +V      +  G      +  L     +
Sbjct: 625 LQPSLKLVLVPNTQSGLLAVTEGKADVFI--DKVVTLASELKTGQYSLLKMSLLSDLADQ 682

Query: 223 ELRPAVAKGNRDLLEQVEQGFAQLSSNEKNRILSRWVHIETI-----YPRYLMPIL--AS 275
                +      L   + +  AQ+   ++ +I S WV          Y R++  +L  A 
Sbjct: 683 HSHFGLNPQFSSLAPLINRVLAQIDQQKQQQIYSHWVSFTIATDDGQYLRWIRYLLFGAL 742

Query: 276 GLLLSIVIYTLQLRRTVRLRTQQLEEANQKLSYLAKTDSLTDIANRRSFFEHLE----AE 331
           GL L +V+  +  RR  R  T+++  A ++L ++A  D LT + NR    + L     + 
Sbjct: 743 GLSLFMVVVLVVNRRLKREITRRIA-AEKRLQHVASHDVLTQLPNRGLLDDRLSQALLSH 801

Query: 332 QTRSGSLTLMVFDIDDFKTINDRFGHGAGDNAICFVVGCVRQALASDTYFARIGGEEFAI 391
           +       L+  D+D FK +ND+ GH  GD  +  V G + QA+      AR GG+EF I
Sbjct: 802 RRDQSHFALLFIDLDGFKQVNDQHGHPIGDALLLRVAGLLTQAIRHSDTVARFGGDEFVI 861

Query: 392 VA-RGKNAEESQQLAERICQRVAEKKWVVNAQHSLSLTISLGCAFYLHPARPF--SLHDA 448
           +  R ++ + + Q+A+ I   ++    +     ++ + +S+G   Y          L  A
Sbjct: 862 LLNRVQDLDAATQVADNILHSLSSPFTIEGV--TVEIAVSIGVVIYPRDGDTAIELLKKA 919

Query: 449 DSLMYEGKRNG 459
           D LMY+ K  G
Sbjct: 920 DQLMYQAKTVG 930



 Score = 68.2 bits (165), Expect = 1e-15
 Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 37  ERQTLTIANSKAWKPYSYLDEQGQPSGILIDFWLAFGEANHVDIEFQLMDWNDSLEAVKL 96
           ++  + +A     +P+  L   G P G  +D W  +     +DI F   D N ++  V+ 
Sbjct: 252 QKPGIVVAMQLGVEPFVDLGVDGLPHGFYVDLWRLWSAKTGIDINFISGDMNGTVNDVRQ 311

Query: 97  GKSDVQAGLIRSASRLAYLDFAEPLLTIDTQLYVHRTLLGDKLDTLLSGAINVSLGVVKG 156
           G +D   G   S      L  A  L T+ ++L++++  L D L   L G     +GVV  
Sbjct: 312 GLADAHIGYPESDDMKTGLTRAWQLYTVKSRLFLYQQQLTDLLS--LKGK---RIGVVPT 366

Query: 157 GFEQEFMQREYPQLKLIEYANNELMMSAAKRRELDGFVADTQVANFYIVVSNGAKDFTPV 216
                 +++  P +    Y N + M++AA+  E+ GFVA     + Y++ +    DF   
Sbjct: 367 APYLVSLRKALPDVAFRYYDNMDAMVAAARAGEIIGFVAAGAWTSHYLLQNKAWADFHQY 426

Query: 217 KFL-YSEELRPAVAKGNRDLLEQVEQGFAQLSSNEKNRILSRWV 259
             L +  E+       +  L +++  GF  +S  E   +  +W+
Sbjct: 427 PELEFPTEIYVLTRSDDPGLTQRITNGFRSISMQEFADVEQKWM 470