Pairwise Alignments

Query, 469 a.a., sensor domain-containing diguanylate cyclase from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  137 bits (346), Expect = 6e-37
 Identities = 126/461 (27%), Positives = 208/461 (45%), Gaps = 51/461 (11%)

Query: 35  AVERQTLTIANSKAWKPYSYLDEQGQPSGILIDFWLAFGEANHVDIEFQLM---DWNDSL 91
           A  RQ +       W PY  + E G+  GI  D+ + + E+ H + +F L+    W+++L
Sbjct: 41  ASSRQLIRYCVDPDWLPYEAIRE-GEHVGISSDY-IRYIES-HSNFKFSLVPTTSWSETL 97

Query: 92  EAVKLGKSDVQAGLIRSASRLAYLDFAEPLLTIDTQLYVH--RTLLGDKLDTLLSGAINV 149
             ++ G+ ++   L ++A+R  +L F+         +Y H    L+  K    L G  N+
Sbjct: 98  NFLQTGRCELTPMLNKTATREQFLHFSH--------VYFHSPNVLVSLKEQPFLQGFENI 149

Query: 150 ---SLGVVKGGFEQEFMQREYPQLKLIEYANNELMMSAAKRRELDGFVADTQVANFYIVV 206
              +L V KG    E++Q  YP++K+IE  +    + A   +  D FV      N YI  
Sbjct: 150 GSRTLAVPKGYRLAEYIQHYYPKVKIIEVGSEPAGLEAVLDKRADLFVGSMFSVNAYIQQ 209

Query: 207 SNGAKDFTPVKFLY----SEELRPAVAKGNRDLLEQVEQGFAQLSSNEKNRILSRWVHIE 262
           +     F  +K        +ELR  V+ G+  LL  + Q    +   E+ RI  +W +I 
Sbjct: 210 TG----FNHLKIAGWGGPEDELRMGVSLGHEALLPILNQVLDDVDELERIRIYQKWNNIT 265

Query: 263 TI--------YPRYLMPILASGLLLSIVIYTLQLRRTVRLRTQQLE-------EANQKLS 307
            I        Y   +  +L   LL +   +  +  R +  + +QLE         N +L 
Sbjct: 266 VIDETNYLLIYQVIVGTLLVVFLLATRTFFISRYNRRLTDKNEQLEALRLRLEHTNAELE 325

Query: 308 YLAKTDSLTDIANR----RSFFEHLEAEQTRSGSLTLMVFDIDDFKTINDRFGHGAGDNA 363
           +L+  D LT + NR    R F     +E +  G++ L++ DID FK IND  GH  GDN 
Sbjct: 326 FLSTHDPLTKLYNRHYFNRQFVHEHRSEISSEGAICLVMLDIDFFKEINDTLGHAVGDNI 385

Query: 364 ICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKKWVVNAQH 423
           +  + G ++  +      AR GGEEF I+      + S  L + +CQR+A          
Sbjct: 386 LMELSGVLQHCVRETDVVARWGGEEFVILCH----QTSIDLVKTLCQRIAAAIKDYRFSG 441

Query: 424 SLSLTISLGCAFYLHPARPFSLHD-ADSLMYEGKRNGKNQV 463
           ++ LT S G A  ++     S  + AD  +Y+ K  G+NQ+
Sbjct: 442 NVQLTCSFGIAKLVNNEPMQSCFERADKALYQAKALGRNQI 482