Pairwise Alignments

Query, 410 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., Permeases of the major facilitator superfamily from Pseudomonas fluorescens FW300-N2E2

 Score = 94.4 bits (233), Expect = 6e-24
 Identities = 90/397 (22%), Positives = 171/397 (43%), Gaps = 28/397 (7%)

Query: 19  LCLGILYAWSVFNKALVTDFGWSAADASSPYAIATIAFSVCLLVAGILQDRMGPRNILIL 78
           L LG+ + + +F   +  +FGW     +   A+  + + +     G L DR G   ++++
Sbjct: 21  LSLGVRHGFGLFLAPMSAEFGWGREVFAFAIALQNLIWGLAQPFTGALADRFGAAKVVLI 80

Query: 79  GTTLTGLGMIASGFASSVLMLNLTFGVMTGAGI-GFGYACLSPSAMKWFHPSKKGMVNGL 137
           G  L  LG++  G A S   L+L+ G++ G G+ G  ++ +     +   P K+ M  G+
Sbjct: 81  GGVLYALGLVFMGMADSPWSLSLSAGLLIGIGLSGTSFSVILGVVGRAVPPEKRSMGMGI 140

Query: 138 IAAGFGLAAIYLAPLTSALITHLGIQTSFMILGAGVLAIAVPLACTINNPPAGYVPAEPK 197
            +A        + P T  LI  LG   + + LG  ++A+ VPL   + + P   +P    
Sbjct: 141 ASAAGSFGQFAMLPGTLGLIGWLGWSAALLALGL-LVALIVPLVSMLKDAP---LPV--- 193

Query: 198 LKAGQEAKVVAKVANLSWKAMLKTPQFYALWLMYA--LAASVGLMIIGNITNIASVQANL 255
             AG E  +         +A+ +       WL+          ++ IG       V  +L
Sbjct: 194 --AGHEQTL--------GEALREACSHSGFWLLAVGFFVCGFQVVFIGVHLPAYLVDQHL 243

Query: 256 PNAV--YLASILAIFNSGGRVAAGILSDKIGGVRTLLLAFLLQGGNMVLFATFDSEFT-- 311
           P +V   + +++ +FN  G   AG L  ++   R L   +L++   + LF       T  
Sbjct: 244 PASVGTTVLALVGLFNIFGTYTAGWLGGRMSKPRLLTGLYLVRAVVIGLFLWLPVTTTTA 303

Query: 312 LIIGTAIAAVGYGTLLAVFPSITAEFYGLKNYGTNYGVLYTSWGIGGAIGAAVVGYSMTH 371
            + G A+  +   T + +     A  +G++N     G+++    +G  +G  + G     
Sbjct: 304 YLFGMAMGLLWLST-VPLTNGTVATLFGVRNLSMLGGIVFLFHQLGSFLGGWLGGVVYDR 362

Query: 372 GGGYNLAYTISAAMMAVCILLALITKPISAEKVAQLQ 408
            G Y+L + +S   + + +L A +  P+    VA+LQ
Sbjct: 363 TGSYDLIWQVS---ILLSLLAAALNWPVRERPVARLQ 396



 Score = 33.5 bits (75), Expect = 1e-05
 Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 27/145 (18%)

Query: 277 GILSDKIGGVRTLLLAFLLQGGNMVLFATFDSEFTL------IIGTAIAAVGYGTLL--- 327
           G L+D+ G  + +L+  +L    +V     DS ++L      +IG  ++   +  +L   
Sbjct: 66  GALADRFGAAKVVLIGGVLYALGLVFMGMADSPWSLSLSAGLLIGIGLSGTSFSVILGVV 125

Query: 328 --AVFPSITAEFYGLKNYGTNYGVLYTSWGIGGAIGAAVVGYSMTHGGGYNLAYTISAAM 385
             AV P   +   G+ +   ++G      G  G IG   +G+S              AA+
Sbjct: 126 GRAVPPEKRSMGMGIASAAGSFGQFAMLPGTLGLIGW--LGWS--------------AAL 169

Query: 386 MAVCILLALITKPISAEKVAQLQTA 410
           +A+ +L+ALI   +S  K A L  A
Sbjct: 170 LALGLLVALIVPLVSMLKDAPLPVA 194