Pairwise Alignments

Query, 360 a.a., site-2 protease family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 374 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  457 bits (1177), Expect = e-133
 Identities = 238/372 (63%), Positives = 281/372 (75%), Gaps = 14/372 (3%)

Query: 1   MELLCIDYLGKPLRLEGTMAGWQQLFWDNILVAQRPAQEQYEGDIQHHFQLTQ------- 53
           MELL ID LGK LRLEG++AGWQ LFWDN LV+Q+ A     G   H F+LTQ       
Sbjct: 1   MELLKIDCLGKSLRLEGSLAGWQLLFWDNNLVSQKAASVDNGGLKVHQFELTQHHSQLAS 60

Query: 54  --GE-HVLE----CCLEIALTWQPFQLQYQTKLNGELVAQGMRSEKDVERQTPYEAPKVE 106
             GE  VLE      LE  + WQPF+  Y+  ++ E++AQG R+EKD+ERQ P       
Sbjct: 61  DSGEAQVLENKILVRLETDVVWQPFRFDYRLLVDEEVIAQGTRTEKDIERQMPEIPVTAP 120

Query: 107 RRFSVIGLVSLAMKALKSAKMIKVVMASASLAAYSWLFSFQFALALIGCLVFHEYGHVRA 166
           ++FS +GL SL  K LKSAK+IKVV+A AS+AAYSWLFSFQFALALI CLVFHEYGH+RA
Sbjct: 121 QKFSFVGLASLGFKLLKSAKVIKVVLAGASVAAYSWLFSFQFALALIACLVFHEYGHIRA 180

Query: 167 MKYFGMKTKGIYLVPFLGGLALSDEKINTRWQDVVISIMGPCFGFLLSLLLVGVYWVTDS 226
           MKYFGMKTKGIYL+PF+GGLALSDEKINTRWQDVVISIMGP FG L+S+  +  Y  TD+
Sbjct: 181 MKYFGMKTKGIYLIPFMGGLALSDEKINTRWQDVVISIMGPTFGLLMSVGSLIAYHFTDN 240

Query: 227 PFWAALAVFNAFLNLFNLLPVLPLDGGHILKSVSFSMNSKMGVILCVLAILGGIALSYSL 286
            F+A LA FNA LNLFNLLP+LPLDGGHILKS+SFSMNS MG+I CV+    G+ +SY+L
Sbjct: 241 IFFAGLAAFNALLNLFNLLPILPLDGGHILKSISFSMNSIMGLIACVIGAAFGVYISYTL 300

Query: 287 GLTLFGFLLLMGALDIVFEWRQRHHSHLLPLNRYAQMVSTIWYFALVSGLIAIIIGFAST 346
           GL L GFLLL+G+L+IVFEWR RH SHLLPL+RY Q+ STIWY A V+ L+ II   A T
Sbjct: 301 GLALLGFLLLIGSLEIVFEWRSRHQSHLLPLDRYGQIFSTIWYLATVAALVGIIWHLAGT 360

Query: 347 GDTLLSLPLLIL 358
           GD +LSLPL IL
Sbjct: 361 GDDMLSLPLQIL 372



 Score = 24.6 bits (52), Expect = 0.004
 Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 30/134 (22%)

Query: 253 GHILKSVSFSMNSKMGVILCVLAILGGIALS------------YSLGLTLFGFLLLMGAL 300
           GHI     F M +K G+ L  +  +GG+ALS             S+    FG L+ +G+L
Sbjct: 176 GHIRAMKYFGMKTK-GIYL--IPFMGGLALSDEKINTRWQDVVISIMGPTFGLLMSVGSL 232

Query: 301 -------DIVFEWRQRHHSHL--------LPLNRYAQMVSTIWYFALVSGLIAIIIGFAS 345
                  +I F      ++ L        LPL+    + S  +    + GLIA +IG A 
Sbjct: 233 IAYHFTDNIFFAGLAAFNALLNLFNLLPILPLDGGHILKSISFSMNSIMGLIACVIGAAF 292

Query: 346 TGDTLLSLPLLILG 359
                 +L L +LG
Sbjct: 293 GVYISYTLGLALLG 306