Pairwise Alignments

Query, 301 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  138 bits (348), Expect = 1e-37
 Identities = 91/282 (32%), Positives = 142/282 (50%), Gaps = 7/282 (2%)

Query: 4   SLKQLAVFDAVADCGSVSQAADKLALTQSATSMSLAQLEKMLGRPLFERQGKQMALTHWG 63
           SLKQL VF  +    +++ AAD L L+++A SM+L++LEK LG  LF+R   ++ L   G
Sbjct: 6   SLKQLKVFSTLTQHKTLTAAADGLFLSKAAVSMALSELEKQLGHNLFDRVNNRLILNQEG 65

Query: 64  MWLRPKAKRLLQDAQQIEMGFYDQHLLSGEIRLGASQTPAEHLVPDLISIIDSDFPEIRI 123
             L+P A  LL  A  IE  F D+  LSG +R+GAS T    + P L+S           
Sbjct: 66  HKLQPLADELLHRAGDIEQLFNDEQSLSGLLRIGASDTLGNQVAPYLLSDFRRHTQHELQ 125

Query: 124 SLGVKSTKGVIEGVLDYKYDLGIIEGRCDDNRIYQEVWCRDHLTIVASAHHPFAKRESVS 183
           SL + ++  + + ++ Y+ D+ +IEG+     +    +  D + ++    HP      + 
Sbjct: 126 SLFISNSTQICDMLIAYELDIALIEGKIQHPELDATPFSSDEMCVICPPDHPLPADSDIP 185

Query: 184 LAQLEQAKWVLREQGAGTRNIFDSVIHPLIPDLDVWRE---YEHVPVLRTLVANGPYLTC 240
           L  LE + W+LRE G+G+R  F  V+    P L+ W E     +   L   V+ G  L C
Sbjct: 186 LHHLEASHWILREAGSGSREFFLRVV---APRLEQWHEAFQLNNTEALINSVSAGLGLAC 242

Query: 241 LPYLDVERFIESGLLVALNVPELNMERTLSFIWRADMEENPL 282
           L  L  E  I  G +  L++P LNM+R    +   +   +PL
Sbjct: 243 LSRLSAEPAIRDGRVKVLSLP-LNMKRRFWLLVHKEKYLSPL 283