Pairwise Alignments

Query, 301 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  144 bits (362), Expect = 3e-39
 Identities = 93/268 (34%), Positives = 142/268 (52%), Gaps = 2/268 (0%)

Query: 1   MRYSLKQLAVFDAVADCGSVSQAADKLALTQSATSMSLAQLEKMLGRPLFERQGKQMALT 60
           MR +L+QLAVF+AVA  G V++AA+++ L+  ATSM+LA+LEK L   LFER G ++ L 
Sbjct: 1   MRITLRQLAVFEAVARSGQVAKAAEQVNLSPPATSMALAELEKQLNARLFERIGNRLQLN 60

Query: 61  HWGMWLRPKAKRLLQDAQQIEMGFYDQ-HLLSGEIRLGASQTPAEHLVPDLISIIDSDFP 119
             G  L P A  LL   +QIE  F  Q   L G++ + AS T   +L+            
Sbjct: 61  SQGNLLLPLAADLLHRVEQIEQAFTPQGGDLVGQLSVSASSTIGNYLLAKAAVAFCQQHT 120

Query: 120 EIRISLGVKSTKGVIEGVLDYKYDLGIIEGRCDDNRIYQEVWCRDHLTIVASAHHPFAKR 179
           +  + + + +T+ VI+ V  ++ ++G IEG C DNR++ E W +D L +     HP A +
Sbjct: 121 QTHVEVAITNTQDVIQSVAQFRAEMGFIEGHCTDNRLHIEPWHKDRLLVFCHPAHPLAGQ 180

Query: 180 ESVSLAQLEQAKWVLREQGAGTRNIFDSVIHPLIPDLDVWREYEHVPVLRTLVANGPYLT 239
              S A   Q+ WVLRE+G+GTR  F +  + L    +    +     ++  V  G  L 
Sbjct: 181 TVKSFAVKGQS-WVLREEGSGTREYFVNAANELGMQPESKFCFTTPDAIKLAVKQGAGLG 239

Query: 240 CLPYLDVERFIESGLLVALNVPELNMER 267
            L  L +E+ I    L  + +  L +ER
Sbjct: 240 VLSELALEKEISRKELALVTIEGLVLER 267