Pairwise Alignments

Query, 483 a.a., formate transporter FocA from Vibrio cholerae E7946 ATCC 55056

Subject, 508 a.a., formate/nitrite transporter (RefSeq) from Shewanella loihica PV-4

 Score =  407 bits (1047), Expect = e-118
 Identities = 211/480 (43%), Positives = 306/480 (63%), Gaps = 38/480 (7%)

Query: 24  FALSKAKKTSGMILGLSVMAGAFIGLAFLFYITVTTGSASAGWGLSRLAGGVAFSMGLIL 83
           +   K  K +   +G ++ AGAFI LAF+FY+TVTTG AS  WG+ RL GG+AFS+GL+L
Sbjct: 31  YGQEKVTKQAMQSIGQAMFAGAFIALAFVFYLTVTTG-ASGDWGMVRLVGGLAFSLGLML 89

Query: 84  IVICGGELFTSSVLSSISWANREISFGKMLSIWGKVYVGNFIGAIFLLLLVTAAGLYQLD 143
           +VICGGELFTSSVLSS++WA + +S  ++L+ WG+VY+GNF GA+ +L L+ +A +Y LD
Sbjct: 90  VVICGGELFTSSVLSSVAWAQKRVSTRELLACWGRVYLGNFCGAMIMLALILSAKMYLLD 149

Query: 144 EGQWGLNALNIAQHKLHHTTVQAFALGILCNLLVCLAIWLTFSSANAMTKAAMTIMPVAM 203
            G WGLNAL +AQHKLHH+  QAFALGILCN+LVCL +W+TF+S  A+TKA + ++PVAM
Sbjct: 150 GGLWGLNALKVAQHKLHHSWGQAFALGILCNMLVCLGVWMTFASKEALTKAILLMLPVAM 209

Query: 204 FVSSGFEHCVANMFMVPLGIVIQNFAPDSFWQQVGVTASQYSDLNVTQFITANLIPVTLG 263
           FVSSGFEH +AN+FMVPLGI I+  A   ++Q  G TA Q+SDL +  F+T NLIPVT G
Sbjct: 210 FVSSGFEHSIANLFMVPLGIAIKQLAIWDWYQIPGFTAEQFSDLTLLHFLTNNLIPVTAG 269

Query: 264 NIVGGAVLVGLANW------------------SIYRRPQLK--------------AANVV 291
           NIVGG ++VGL  W                  +++  P L               AAN +
Sbjct: 270 NIVGGGLVVGLGYWWIDSSKAHVGPLAQVTSMTVHLEPVLSRSDQSNRQDNGSELAANSI 329

Query: 292 TITETQAL---TSVKETLMKSTITVKDMMNSQPVTLSVDMTTPAAIDTLLDHHLSAAPVV 348
           +I  ++A    T + +++ K  ++V  +M   P TL+ +++    +  L +  L  APVV
Sbjct: 330 SILSSKACRGETQMPKSIQKLNVSV--LMEQTPFTLAPELSVYEGLKQLNEKQLRGAPVV 387

Query: 349 DMQGRLVGVLSSHDVMVDLWCQDYLPSQDQKVVDLMTRDVIAIDVNDKLVDVAEFFCIDK 408
           D + RL+G +S  D++  LW ++++     KV DLM   V+ +  +D + D+ E   +D+
Sbjct: 388 DAKQRLLGFVSQQDLLRSLWSEEFVRGISYKVADLMQTRVLTVTPDDAVADLIEVMVVDR 447

Query: 409 EQLFPTTSMGIATRFSALSLEERAKSMKVNKPHMLPVLHNGQLVGVLERNDVLEALRPIY 468
           ++LFP + MG+ T  +  S EER +    +KP   PV+  G+LVGV+ R  ++  +  IY
Sbjct: 448 DKLFPVSDMGVLTGHTYASYEERLRHASASKPSCFPVVSEGKLVGVINRESIVAKVCAIY 507