Pairwise Alignments

Query, 230 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 255 a.a., two component transcriptional regulator, winged helix family from Synechococcus elongatus PCC 7942

 Score =  153 bits (386), Expect = 3e-42
 Identities = 93/233 (39%), Positives = 136/233 (58%), Gaps = 19/233 (8%)

Query: 6   KILIIEDEAPIQRFLTVLISGYEYQVKVASTAEQGLHLVANWNPHLILLDLGLPDQDGIS 65
           KIL+++DEA ++R LT+ +S   YQV VAS   + L +     P LI+LD+ LP  DG  
Sbjct: 15  KILVVDDEAAVRRILTMRLSMAGYQVVVASDGHEALAMFEQEAPDLIVLDVMLPKLDGYG 74

Query: 66  LTRELRAWTQTPIMVISAREKEADKVQALDAGANDYLTKPFGSEELMARIRVALR----- 120
           + RELR  +  PI+++SA    AD++  LD GA+DYL KPF  +EL ARI   LR     
Sbjct: 75  VCRELRKLSDVPIIMLSALGDIADRITGLDLGADDYLPKPFSPKELEARIATILRRLDDS 134

Query: 121 ----LAPSTESVEQTRFELGDLVLDLVLKQVTKAGEPVKLTKTEYNILKLLAKNMGKVLT 176
                APS+  V      + D+ +D   +QV + GE V LT TE+++L+LL +  G+V+ 
Sbjct: 135 PNALSAPSSPGV----LRISDVEIDTNRRQVFQRGERVPLTYTEFSLLELLFRQPGRVVP 190

Query: 177 HKQILKEVWGGNYVEHHH----YVRIHVAQLRHKVEDNPAQPRFILTENGVGY 225
             +IL+E+WG  Y    +     V ++VA+LR K+E +P  P  I+T  G GY
Sbjct: 191 RAEILEELWG--YPPRRNADLRVVDVYVARLRSKLEADPRNPELIITVRGTGY 241