Pairwise Alignments

Query, 230 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 229 a.a., transcriptional regulatory protein KdpE (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  162 bits (411), Expect = 4e-45
 Identities = 87/224 (38%), Positives = 136/224 (60%), Gaps = 2/224 (0%)

Query: 6   KILIIEDEAPIQRFLTVLISGYEYQVKVASTAEQGLHLVANWNPHLILLDLGLPDQDGIS 65
           K+L+++DE  I  F+ + +    ++   A++    L    +  PHLI+LDLGLPD DGI 
Sbjct: 4   KVLVVDDEPQIHTFMRISLEAEGFEYLSATSIGSALKQYRSHQPHLIVLDLGLPDGDGIE 63

Query: 66  LTRELRAWTQTPIMVISAREKEADKVQALDAGANDYLTKPFGSEELMARIRVALRLAPST 125
           L   LR   +TP++V++AR++E +K++ L+AGANDYL+KPFG  EL+ RI+V +R    T
Sbjct: 64  LLHMLRQQDKTPVLVLTARDQEEEKIRLLEAGANDYLSKPFGIRELIVRIKVLMRDLVDT 123

Query: 126 ESVEQTRFELGDLVLDLVLKQVTKAGEPVKLTKTEYNILKLLAKNMGKVLTHKQILKEVW 185
            S+     + G L L     Q     + + LTK E+ +L  L  + G+++   ++L+ +W
Sbjct: 124 -SIAADVLQFGPLKLQKSSHQCWLNQQEIALTKKEFALLAHLMSHPGQLVKQSELLRRIW 182

Query: 186 GGNYVEHHHYVRIHVAQLRHKVEDNPAQPRFILTENGVGYRLVD 229
           G  + E  HY+RI V+QLR K+ D+  Q + I TE G+GYRL D
Sbjct: 183 GETHQEDGHYLRILVSQLRKKLNDSDEQ-QLIKTEPGLGYRLTD 225