Pairwise Alignments

Query, 497 a.a., sensor histidine kinase KdpD from Vibrio cholerae E7946 ATCC 55056

Subject, 745 a.a., GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score =  107 bits (268), Expect = 1e-27
 Identities = 79/251 (31%), Positives = 118/251 (47%), Gaps = 14/251 (5%)

Query: 241 RSLLTLSLARAHAHRTLAHVEAEKQLESTRTTLLASVSHDLKTPLGAIIGSATTLTDPSL 300
           RS L   LAR         V  E+Q    R  L+A VSHDL+ P+  I      +     
Sbjct: 500 RSALENDLAR--------QVRREQQAVRARDELVAVVSHDLRNPMTVISMLCGMMQKSFS 551

Query: 301 HLSTETQQELLTSI---AEQGERLNRSLTKLLDITRYTASALVPKLDWVEPEELIGTVLS 357
                T + + T+I    +   R+N  L  LLD ++  A         +E  ++     +
Sbjct: 552 SDGPHTSRRISTAIDTMQQAASRMNVLLEDLLDTSKIEAGRYTITPQPLEVSQIFEEAYT 611

Query: 358 RLAPRLTHHKVQIE--SQPML-VELDSLLIEQVLINLVENAAKYTPRGSEIEIACAYQEQ 414
            LAP      ++I   ++P L V+ D   + QVL NL+ NA K+TP+   I +A      
Sbjct: 612 LLAPLAMDKSIEISFNAEPDLKVQADPERLFQVLSNLIGNAIKFTPKMGTIGVAAMSNGT 671

Query: 415 QFTLAVMDNGAGIPDEALPRIFDRFYRVEGNHADGTGLGLAICQVIVAAHQGSIRVHNRE 474
           +    V D+G GIP E LP IF+R++ V+  +  GTGLGL I Q I+ AH G +   ++ 
Sbjct: 672 EIVFTVRDSGEGIPPEQLPHIFERYWTVKEGNPTGTGLGLYISQGIIKAHGGELAAQSQV 731

Query: 475 SGGACFTVTIP 485
             G+ F  T+P
Sbjct: 732 GEGSEFRFTVP 742