Pairwise Alignments

Query, 497 a.a., sensor histidine kinase KdpD from Vibrio cholerae E7946 ATCC 55056

Subject, 994 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  108 bits (269), Expect = 1e-27
 Identities = 77/266 (28%), Positives = 128/266 (48%), Gaps = 11/266 (4%)

Query: 228 EALRRESKIAPWVRSLLTLSLARAHAHRTLAHV-EAEKQLESTRTTLLASVSHDLKTPLG 286
           +A + E+ I    +++   +L    A+  LA + E  ++L+  +T   A++SH+L+TPL 
Sbjct: 172 QAEKMEADIYARSKTIAENNLRLHQANAELARLYEKTRELDELKTQFFANISHELRTPLT 231

Query: 287 AIIGSATT-LTDPSLHLSTETQQELLTSIAEQGERLNRSLTKLLDITRYTASALVPKL-- 343
            I+G     L DP L  +     E+   +      L R +  LLD+ +  A  +V     
Sbjct: 232 LILGPVGKHLADPDLAPALRRDLEV---VERNARMLYRHVNDLLDVAKLEAGRMVMHYTE 288

Query: 344 -DWVEPEELIGTVLSRLAPRLTHHKVQIESQPMLVELDSLLIEQVLINLVENAAKYTPRG 402
            D      +I +    LA       V      +  ++D+   +++L+NL+ NA K+   G
Sbjct: 289 GDLAHLTRVIASHFDSLAEGRRVRYVVTTPPDLTAQVDAEKYQRILLNLLSNAFKFAGDG 348

Query: 403 SEIEIACAYQEQQFTLAVMDNGAGIPDEALPRIFDRFYRVEG---NHADGTGLGLAICQV 459
             I++       Q  + V DNG GIP+    ++F+ F +VEG    H  GTGLGLAI + 
Sbjct: 349 GAIQLRLTAAGGQARIEVEDNGPGIPEAMREQVFEPFRQVEGGSSRHHGGTGLGLAIVRE 408

Query: 460 IVAAHQGSIRVHNRESGGACFTVTIP 485
           +   H GS+R+    S GA FT+ +P
Sbjct: 409 LAQLHGGSVRIDAAPSSGALFTLELP 434



 Score = 91.3 bits (225), Expect = 1e-22
 Identities = 79/247 (31%), Positives = 114/247 (46%), Gaps = 12/247 (4%)

Query: 244 LTLSLARAHAHRTLAHVEAEKQLESTRTTLLASVSHDLKTPLGAIIG-SATTLTDPSLHL 302
           L   L R    RT     A ++L+S       +VSHDL+ PL AI G S   + D    L
Sbjct: 737 LNADLERRVEERTAELRAANRELDS----FAHAVSHDLRAPLRAITGFSRAIIEDHGTAL 792

Query: 303 STETQQELLTSIAEQGERLNRSLTKLLDITRYTASALVPKLDWVEPEELIGTVLSRLAPR 362
             E + E L  I   G+++   +  LL ++R +   L  + D ++   L   +L  LA  
Sbjct: 793 PAEAR-EFLDHIIASGQQMGALIEGLLTLSRSSREEL--RRDDIDLSALARRILEELARS 849

Query: 363 LTHHKVQIESQPMLVEL-DSLLIEQVLINLVENAAKYTPRGSE--IEIACAYQEQQFTLA 419
              H+V  + +  LV   D  +I  VL NL+ NA KYT R +   I +    QE+Q    
Sbjct: 850 EPGHRVAWQVEDGLVARGDIRMIGVVLRNLLGNAWKYTARTAAPLIRVHARRQEKQIQFC 909

Query: 420 VMDNGAGIPDEALPRIFDRFYRVEG-NHADGTGLGLAICQVIVAAHQGSIRVHNRESGGA 478
           + DNGAG     + ++F  F R+   +   G G+GLA  Q +V  H GSI        GA
Sbjct: 910 IADNGAGFDMAQVGKLFQPFQRLHRQDEFPGIGIGLATVQRVVHRHGGSIEARGEAGHGA 969

Query: 479 CFTVTIP 485
            F  T+P
Sbjct: 970 SFCFTLP 976