Pairwise Alignments

Query, 497 a.a., sensor histidine kinase KdpD from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  115 bits (288), Expect = 2e-30
 Identities = 70/218 (32%), Positives = 112/218 (51%), Gaps = 5/218 (2%)

Query: 270 RTTLLASVSHDLKTPLGAIIGSATTLTDPSLHLSTETQQELLTSIAEQGERLNRSLTKLL 329
           R ++L SVSHDL+TPL  IIG+ TTL +    LS    +EL+ S A +  RL++ +  LL
Sbjct: 128 RNSILLSVSHDLRTPLATIIGTLTTLKEYQPKLSPAQTEELIDSAAAESHRLHQYIENLL 187

Query: 330 DITRYTASALVPKLDWVEPEELIGTVLSRLAPRLTHHKVQIESQPMLVEL--DSLLIEQV 387
              +    AL   LD     E++   ++R   +    ++QI+S+P L  L   S LIEQ 
Sbjct: 188 QANKLQHGALKFSLDEANIREVLQRTIARF--QTEQPRIQIQSEPELPSLMICSSLIEQA 245

Query: 388 LINLVENAAKYTPRGSEIEIACAYQEQQFTLAVMDNGAGIPDEALPRIFDRFYRVEGNHA 447
           + N+++NA  Y+P    + ++    +    + + D G GI       IF+ FYR      
Sbjct: 246 IFNVLDNALHYSPATQPVTVSLYRHQHMLRIDIQDQGKGIAPSQTGAIFELFYRQHPTTD 305

Query: 448 DGTGLGLAICQVIVAAHQGSIRVHNRESGGACFTVTIP 485
            G GLGL + + I+ AH G+I    + + G+   + +P
Sbjct: 306 GGAGLGLPVAKGIITAHNGTISA-EKVAHGSLIRIALP 342