Pairwise Alignments

Query, 497 a.a., sensor histidine kinase KdpD from Vibrio cholerae E7946 ATCC 55056

Subject, 1119 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

 Score =  105 bits (262), Expect = 8e-27
 Identities = 80/252 (31%), Positives = 126/252 (50%), Gaps = 17/252 (6%)

Query: 243 LLTLSLARAHAHRTLAHVEAEKQLESTRTTLLASVSHDLKTPLGAIIGSATTLTDPSLHL 302
           L  +S  +A+  +     E  +Q    ++  LA++SH++++PL AI+G    L D SL  
Sbjct: 471 LRDISERKANEQKLQQAKEQAEQGSKVKSRFLATMSHEIRSPLNAILGGVELLLDSSL-- 528

Query: 303 STETQQELLTSIA-EQGERLNRSLTKLLDITRYTASALVPKLDWVEPEELIGTVLSRLAP 361
                Q +  +IA E G  L  ++  +LD ++  A  +V +    EP++L+  VL  L P
Sbjct: 529 --SKDQRIHANIAREAGSALLHTINDILDFSKIEAGQMVLESHEFEPDKLVAQVLQILEP 586

Query: 362 RLTHHKVQIES-----QPMLVELDSLLIEQVLINLVENAAKYTPRGS---EIEIACAYQ- 412
           +     +++ S      P  V  D   + QVL NLV+NA K+T  G+   E+ I   +Q 
Sbjct: 587 KAFEKGLELVSFVNRNVPRTVVGDQQRLRQVLHNLVDNAIKFTASGTITVEMWIPDNHQT 646

Query: 413 EQQFTLAVMDNGAGIPDEALPRIFDRFYRVEGNH---ADGTGLGLAICQVIVAAHQGSIR 469
           E Q    V D+G GI  EA  ++F  F +V   H     GTGLGLAIC  ++    G+I 
Sbjct: 647 EVQLYCRVTDSGIGISAEAQSKLFKEFSQVHDTHNTNYKGTGLGLAICSELITMMGGTIE 706

Query: 470 VHNRESGGACFT 481
           + +    G+ FT
Sbjct: 707 LQSELGQGSRFT 718