Pairwise Alignments

Query, 468 a.a., ClC family H(+)/Cl(-) exchange transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., chloride channel protein from Synechococcus elongatus PCC 7942

 Score =  342 bits (877), Expect = 2e-98
 Identities = 196/446 (43%), Positives = 269/446 (60%), Gaps = 8/446 (1%)

Query: 6   TFKISLLAKMPKDVINQFLSKDKTPFSVLFLSLLVGILAGLVGTYFEQAVHLVSETRTDW 65
           +F  SLLA   +    +FL   +    VL  + + G++ GLVG  F          R  W
Sbjct: 7   SFVSSLLASRMR--FRRFLEASEGLNLVLLWAAIAGLMVGLVGGAFRWLTSATLNGRVRW 64

Query: 66  LKSEIGSFLPLWLAAFLISAFLAFIGYFLVHRFAPEAAGSGIPEIEGAMDGMRPVRWWRV 125
           L S      P  +A+ L+S+ +  +G++L+ RFAP+ +GSGIP+IEG + G   + WWRV
Sbjct: 65  LASLPQG--PELVASVLLSSGMVALGFYLMRRFAPDTSGSGIPQIEGWLAGFFSLFWWRV 122

Query: 126 LPVKFFGGMGALGSGMVLGREGPTVQMGGAVGRMISDIFRVKNEDTRHSLLAAGAAGGLA 185
           LPVKF  G+  LGSGMV+GREGPT+QMGGA+G+M+SD FR   E  R  L+AA A  GLA
Sbjct: 123 LPVKFLAGILTLGSGMVMGREGPTIQMGGAIGQMVSDWFRASTEQAR-VLVAASAGAGLA 181

Query: 186 AAFNAPLAGIMFVIEEMRPQFRYTLISVRAVIISAVAANIVFRVINGQDAVITMPQYDAP 245
            AFNAPLAGI+FV EEMRP F+  L + +AV I+ + A I  +++ G+   I + Q+ AP
Sbjct: 182 TAFNAPLAGIVFVFEEMRPTFQNRLRAYQAVTIACITATIGLQLLLGKGPTIELAQFGAP 241

Query: 246 ELSTLGLFLLLGALFGVFGVLFNYLITLAQDLFVKFHRNDRKRYLLTGSMIGGCFGLLLL 305
            LS+L +F+LLG   G  G  FN L+  + + F   H    +   LTG  +GG  GL+  
Sbjct: 242 PLSSLWVFVLLGLACGAIGYSFNRLLVWSLNCFATLHGLPLR---LTGLGVGGFIGLVSW 298

Query: 306 YVPELTGGGISLIPTITNGGYGAGILLLLFVGRIFTTLLCFGSGAPGGIFAPMLALGTLF 365
             P  T  G +L+    +       LLLL   R   TLLC+GSGAPGGIFAP+L++ TLF
Sbjct: 299 LYPPATNSGENLVLWAFDTVEPIHTLLLLCSLRFALTLLCYGSGAPGGIFAPLLSIATLF 358

Query: 366 GYAFGLIAKMWFPELNIEPGMFAIAGMGALFAATVRAPITGILLVIEMTNNYHLILPLII 425
               G +   W P L + P + AIAGMGA  AAT+++P+T ILL  E+T+NY LILP+++
Sbjct: 359 SLGLGQLTIDWLPGLLLPPEVLAIAGMGAFVAATIQSPLTAILLTTEITSNYQLILPIMV 418

Query: 426 TSLGAVIFAQLLGGQPIYSQLLHRTL 451
           +   A + A  LG +PIY+ LL R L
Sbjct: 419 SCSAATLIAHGLGSRPIYTVLLERQL 444