Pairwise Alignments

Query, 468 a.a., ClC family H(+)/Cl(-) exchange transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., chloride channel-like from Synechococcus elongatus PCC 7942

 Score =  160 bits (406), Expect = 9e-44
 Identities = 140/451 (31%), Positives = 215/451 (47%), Gaps = 36/451 (7%)

Query: 33  VLFLSLLVGILAGLVGTYFEQAVHLVSETRTDWLKSEIGSFLPLW-----LAAFLISAFL 87
           +L L+  VG+  G     F    HL+ E+    + S + S L  W     LA   +   L
Sbjct: 33  LLLLAAGVGLSTGAAIVGF----HLLYESLHQGVFSWLSSTLSAWGGHQTLALIPLLGGL 88

Query: 88  AFIGYFLVH-RFAPEAAGSGIPEIEGAMDGMRPVRWWRVLPVKFFGGMGALGSGMVLGRE 146
              G  L+  RF P    +G+  +     G  P+R     P K F    +L SG  LG E
Sbjct: 89  VMGGLILIWPRFGPSM--TGLIGLARGTGGDEPLR----TPQKLFAASLSLASGASLGPE 142

Query: 147 GPTVQMGGAVGRMISDIFRVKNEDTRHSLLAAGAAGGLAAAFNAPLAGIMFVIEEMRPQF 206
           GP+V+ GG +G  I+   ++  E  +  L+ AGAA G+AA FNAP+AG+ F  E +    
Sbjct: 143 GPSVESGGNLGLAIARWAKMSRE-RQLLLIGAGAAAGIAAGFNAPIAGVFFAFEVVLGT- 200

Query: 207 RYTLISVRAVIISAVAANIVFRVINGQDAVITMPQYDAPELSTLGLFLLLGALFGVFGVL 266
            +   +V AV+I+AV + +V +V  G     ++P Y       L L+L LG L  +    
Sbjct: 201 SFAGAAVSAVLIAAVLSALVAQVGLGAQPAFSLPDYVVRSPLELPLYLGLGVLASLVSSS 260

Query: 267 FNYLITLAQDLF-------VKFHRNDRKRYLLTGSMIGGCFGLLLLYVPELTGGGISLIP 319
           +  L+ + Q  F           R  R    L  ++ G   GL+ L  P++ G G   I 
Sbjct: 261 YMALVQVLQQAFRGETAIGAVLGRIPRS---LRPALAGLIVGLVALQFPQVLGVGYETIE 317

Query: 320 TITNGGYGAGI-LLLLFVGRIFTTLLCFGSGAPGGIFAPMLALGTLFGYAFGLIAKMWFP 378
            + +G     + L+LL +G++  T LC  SG  GG FAP + LG + G  +G +   +FP
Sbjct: 318 GLLSGMSLTPLTLVLLLIGKLGLTALCLASGFVGGGFAPAMFLGAVLGSFYGWVLTAFFP 377

Query: 379 ELNI---EPGMFAIAGMGALFAATVRAPITGILLVIEMTNNYHLILPLIITSLGAVIFAQ 435
              I    P  +A+ GM A+ A +VRAP+T ILL+ E+T +Y ++LPL+  +  +   A 
Sbjct: 378 TSWIPIASPPAYAMVGMAAVLAGSVRAPLTAILLLFELTRDYRIVLPLMAAAGLSAWLAD 437

Query: 436 LLGGQPIYSQLLHRTLKNQKLQQQDLPPQSP 466
            L  +  +S L     K    ++ DLP + P
Sbjct: 438 RLRPKATHSDLPGLPQK----REPDLPLRLP 464