Pairwise Alignments

Query, 468 a.a., ClC family H(+)/Cl(-) exchange transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 571 a.a., chloride channel (RefSeq) from Shewanella amazonensis SB2B

 Score =  135 bits (339), Expect = 5e-36
 Identities = 118/427 (27%), Positives = 198/427 (46%), Gaps = 44/427 (10%)

Query: 24  LSKDKTPFSVLFLSLLVGILAGLVGTYF----EQAVHLVSETRTD-------W--LKSEI 70
           LS+ +    +  L+L   ++A LV   F    E A H     R D       W  L   +
Sbjct: 26  LSQARISLQLCGLALCFALIASLVIILFRLLLEGANHYSGIERMDMEAMVYDWRALLPLL 85

Query: 71  GSFLPLWLAAFLISAFLAFIGY-FLVHRFAPEAAGSGIPEIEGAMDGMRPVRWWRVLPVK 129
           G+ L +WL A L S     +G  +++HRF                 G  P++     P +
Sbjct: 86  GALL-IWLVATLGSKRYRRMGIAYVLHRFKLHY-------------GKIPLQ---SAPGQ 128

Query: 130 FFGGMGALGSGMVLGREGPTVQMGGAVGRMISDIFRVKNEDTRHSLLAAGAAGGLAAAFN 189
           FF  + AL +   +GREGP + +G     ++++ F++ +   R  + A+G A G+AA FN
Sbjct: 129 FFQALIALATNFSVGREGPAIHLGAVSASVLAEKFKLPDNSVR-IMCASGIAAGIAATFN 187

Query: 190 APLAGIMFVIEEMRPQFR--YTLISVRAVIISAVAANIVFRVINGQDAVITMPQYDAPEL 247
           APLA ++FV E +  +++  Y    + + I  A+++ +VF  ++  DA+    Q     L
Sbjct: 188 APLAAVVFVFEVVVREYKIHYFFPIMISAICGALSSQLVFGNVHEYDAI----QVFHIPL 243

Query: 248 STLGLFLLLGALFGVFGVLFNYLITLAQDLFVKFHRNDRKRYLLTGSMIGGCFGLLLLYV 307
               L  L G   G     FN+  TL +      H     R LL GS I    G+ L   
Sbjct: 244 DHYPLLALGGVGLGCAAAAFNW--TLLKVTATGQHWPLIVRLLLAGS-ITTVVGIAL--- 297

Query: 308 PELTGGGISLIPTITNGGYGAGILLLLFVGRIFTTLLCFGSGAPGGIFAPMLALGTLFGY 367
           P+  G G   I  +     G  +L+ + +G++  T+   G G PGG+  P+  +G L G 
Sbjct: 298 PQALGSGDLAINAVIAENPGLLLLIAVLIGKMIATIAAIGLGIPGGLIGPLYGIGALLGG 357

Query: 368 AFGLIAKMWFPELNIEPGMFAIAGMGALFAATVRAPITGILLVIEMTNNYHLILPLIITS 427
              LI+ M FP +    G++ + GM A+    + AP+  ++ ++E+TN+  +ILP +  +
Sbjct: 358 ILALISAMLFPSIAPYVGLYTVIGMTAMMGVCLSAPLAALVALLELTNDASIILPAMFVT 417

Query: 428 LGAVIFA 434
           + A + A
Sbjct: 418 IPAFLVA 424