Pairwise Alignments

Query, 468 a.a., ClC family H(+)/Cl(-) exchange transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 527 a.a., Cl- channel, voltage gated (NCBI) from Rhodospirillum rubrum S1H

 Score =  153 bits (386), Expect = 2e-41
 Identities = 119/409 (29%), Positives = 194/409 (47%), Gaps = 17/409 (4%)

Query: 36  LSLLVGILAGLVGTYFEQAVHLVSET---RTDWLKSEIGSFLPLWLAAFLISAFLAFIGY 92
           L++ +G+L G     F +A+ LV        D   + +   LP WL     +A    +G 
Sbjct: 26  LAVGIGLLVGAGTVAFREAIDLVQTLFYGGDDLYLARLARSLPGWLVVLGPTAGGLLVGL 85

Query: 93  FLVHRFAPEAAGSGIPEIEGAM--DGMRPVRWWRVLPVKFFGGMGALGSGMVLGREGPTV 150
           +   +  P     G+ ++ GA+   G R      VL     G   +LG G  +GREGP V
Sbjct: 86  YYA-KVMPGGKPQGVAQVIGAVARTGGRMRAGDGVLAA--CGSALSLGCGASVGREGPAV 142

Query: 151 QMGGAVGRMISDIFRVKNEDTRHSLLAAGAAGGLAAAFNAPLAGIMFVIEEMRPQFRYTL 210
            +G A+   ++   R+       ++L  G A  +AA+FNAP+AG +F  E +     Y L
Sbjct: 143 HLGAALAAGLAGRLRL-GPGLARTVLGCGVAAAVAASFNAPIAGALFAGEVVIGH--YAL 199

Query: 211 ISVRAVIISAVAANIVFRVINGQDAVITMPQYDAPELSTLGLFLLLGALFGVFGVLFNYL 270
            +   +++S+V A ++ R   G      +P            F++LG L G+  V F   
Sbjct: 200 SAFAPIVVSSVVATVLSRGWFGDFPAFILPHLTLASAWEFPAFVVLGGLCGLVAVAFMRG 259

Query: 271 ITLAQDLFVKFHRNDRKRYLLTGSMIGGCFGLLLLYVPELTGGGISLIPTITNGGYGAGI 330
           + LA  L          R ++ G+++G    LL L +PE+ G G      +  G Y   +
Sbjct: 260 VFLAGGLASALRLPVVLRPMVAGALVG----LLALVLPEVLGVGYEATDQVLKGAYHLDL 315

Query: 331 LLLLFVGRIFTTLLCFGSGAPGGIFAPMLALGTLFGYAFGLIAKMWFPELNIEPGMFAIA 390
           LL L + ++  +++C G G  GG+F+P L LG L G AFGL   +  P      G +A+ 
Sbjct: 316 LLPLILAKLAASVICLGFGFGGGVFSPSLTLGALVGGAFGLAIALVAPV--SASGAYALI 373

Query: 391 GMGALFAATVRAPITGILLVIEMTNNYHLILPLIITSLGAVIFAQLLGG 439
           GMGAL AA + API+  L+V E+T +Y L +  ++ ++ A   ++ + G
Sbjct: 374 GMGALSAAVLGAPISTTLIVFELTGDYALSVGTMVAAVVAGALSRQICG 422