Pairwise Alignments

Query, 468 a.a., ClC family H(+)/Cl(-) exchange transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 492 a.a., Probable conserved transmembrane protein from Mycobacterium tuberculosis H37Rv

 Score =  112 bits (279), Expect = 4e-29
 Identities = 111/411 (27%), Positives = 174/411 (42%), Gaps = 29/411 (7%)

Query: 36  LSLLVGILAGLVGTYFEQAVHLVSETRTDWLK-----SEIGS--------FLPLWLAAFL 82
           L + +G++AGL    F  A+   SE    +L      + +G         F   W A  L
Sbjct: 50  LGITIGVIAGLGAVVFYLALKYTSEFLLGYLADYQIPTPVGEGGHRGSTGFARPW-AIPL 108

Query: 83  ISAFLAFIGYFLVHRFAPEAAGSGIPE-IEGAMDGMRPVRWWRVLPVKFFGGMGALGSGM 141
           ++   A +   +V + APEA G G  E IE      R +R   VL VK       +GSG 
Sbjct: 109 VTTGGAVLSALIVAKLAPEATGHGTDEAIESVHGDPRAIRGRAVL-VKMVASALTIGSGG 167

Query: 142 VLGREGPTVQMGGAVGRMISDIFRVKNEDTRHSLLAAGAAGGLAAAFNAPLAGIMFVIE- 200
             GREGPT Q+      +++    + NED R + +A G   G+ A F APL G       
Sbjct: 168 SGGREGPTAQISAGFCSLLTRRLNLSNEDGR-TAVALGIGAGIGAIFAAPLGGAALGASI 226

Query: 201 EMRPQFRYTLISVRAVIISAVAANIVFRVINGQDAVITMPQY-DAPELSTLGLFLLLGAL 259
             R  F Y     R ++   +A+   + V+        +  Y DA         LL   +
Sbjct: 227 PYRDDFDY-----RNLLPGFIASGTAYAVLGAFLGFDPLFGYIDAEYRFEKAWPLLWFVV 281

Query: 260 FGVFGVLFNYLITLAQDLFVKFHRNDRKRYLLTGSMIGGCFGLLLLYVPELTGGGISLIP 319
            G+      YL        V   R      +L  ++ G   GLL L +P++   G     
Sbjct: 282 IGLIAAAVGYLYARVFHASVAITRRLPGGPVLKPAIGGLLVGLLGLPIPQILSSGYGWAQ 341

Query: 320 TITNGG----YGAGILLLLFVGRIFTTLLCFGSGAPGGIFAPMLALGTLFGYAFGLIAKM 375
              + G        I+++L + +I  T L  G+G  GG+F P + +G   G A   + ++
Sbjct: 342 LAADRGTLLSIPLWIVIVLPIAKILATSLSIGTGGSGGLFGPGIVIGAFVGAAIWRLGEL 401

Query: 376 W-FPELNIEPGMFAIAGMGALFAATVRAPITGILLVIEMTNNYHLILPLII 425
              P +  EPG+F +  M A F +  RAP+  +++V EMT ++ ++   II
Sbjct: 402 TELPGVPHEPGIFVVVAMMACFGSVSRAPLAVMIMVAEMTGSFSVVPGAII 452



 Score = 32.3 bits (72), Expect = 4e-05
 Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 16/147 (10%)

Query: 308 PELTGGGISLIPTITNGGYGA--GILLLLFVGRIFTTLLCFGSGAPGGIFAPMLALGTLF 365
           PE TG G        +G   A  G  +L+   ++  + L  GSG  GG   P   +    
Sbjct: 126 PEATGHGTDEAIESVHGDPRAIRGRAVLV---KMVASALTIGSGGSGGREGPTAQISA-- 180

Query: 366 GYAFGLIAKMWFPELNIEPGMFAIA-----GMGALFAATVRAPITGILLVIEMTNNYHLI 420
           G+   L  ++    L+ E G  A+A     G+GA+FAA +     G  +      +Y  +
Sbjct: 181 GFCSLLTRRL---NLSNEDGRTAVALGIGAGIGAIFAAPLGGAALGASIPYRDDFDYRNL 237

Query: 421 LPLIITSLGA-VIFAQLLGGQPIYSQL 446
           LP  I S  A  +    LG  P++  +
Sbjct: 238 LPGFIASGTAYAVLGAFLGFDPLFGYI 264