Pairwise Alignments

Query, 468 a.a., ClC family H(+)/Cl(-) exchange transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 574 a.a., chloride channel (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  135 bits (340), Expect = 4e-36
 Identities = 89/311 (28%), Positives = 157/311 (50%), Gaps = 19/311 (6%)

Query: 129 KFFGGMGALGSGMVLGREGPTVQMGGAVGRMISDIFRVKNEDTRHSLLAAGAAGGLAAAF 188
           +FF  + ALG+   +GREGP + +G     ++++ F + +   R  + A+G A G+AA F
Sbjct: 131 QFFQALFALGTNFSVGREGPAIHLGAVSASVLAEKFNLPDNSVR-IMCASGIAAGIAATF 189

Query: 189 NAPLAGIMFVIEEMRPQFR--YTLISVRAVIISAVAANIVFRVINGQDA--VITMPQYDA 244
           NAPLA ++FVIE +  +++  Y    + + I  AV++ +VF  ++  D   VI +P    
Sbjct: 190 NAPLAAVIFVIEVIVREYKVHYFFPIMLSAICGAVSSQLVFGNVHEFDRIQVIHIPLDHY 249

Query: 245 PELSTLGLFLLLGALFGVFGVLFNYLITLAQDLFVKFHRNDRKRYLLTGSMIGGCFGLLL 304
           P L+  G+ L   A F      FNY +       +K     +   L+   ++ G    L+
Sbjct: 250 PILAIGGIVLGCAAAF------FNYAL-------IKVTATGQNWPLIYRLLLAGSITTLI 296

Query: 305 -LYVPELTGGGISLIPTITNGGYGAGILLLLFVGRIFTTLLCFGSGAPGGIFAPMLALGT 363
            L +P+  G G   I    +      +L+ L V +I  T+   G G PGG+  P+  +G 
Sbjct: 297 GLILPQALGTGDLAISEAISEHPSLLLLIALLVAKIVATIAAIGLGIPGGLIGPLYGIGA 356

Query: 364 LFGYAFGLIAKMWFPELNIEPGMFAIAGMGALFAATVRAPITGILLVIEMTNNYHLILPL 423
           L G    L++ + FP +    G++ + GM A+    + AP+  ++ ++EMTN+  +ILP 
Sbjct: 357 LIGAILALVSAILFPSIAPYVGLYTVIGMTAMMGVCLSAPLAALVALLEMTNDASIILPA 416

Query: 424 IITSLGAVIFA 434
           +  ++ A + A
Sbjct: 417 MFVTIPAFLIA 427



 Score = 33.9 bits (76), Expect = 1e-05
 Identities = 40/164 (24%), Positives = 63/164 (38%), Gaps = 18/164 (10%)

Query: 41  GILAGLVGTYFEQAVHLVSETRTDWLKSEIGSFLPLWLAAFLISAFLAFIGYFLVHRFAP 100
           GI+ G    +F  A+  V+ T  +W         PL     L  +    IG  L     P
Sbjct: 256 GIVLGCAAAFFNYALIKVTATGQNW---------PLIYRLLLAGSITTLIGLIL-----P 301

Query: 101 EAAGSGIPEIEGAMDGMRPVRWWRVLPV-KFFGGMGALGSGMVLGREGPTVQMG---GAV 156
           +A G+G   I  A+     +     L V K    + A+G G+  G  GP   +G   GA+
Sbjct: 302 QALGTGDLAISEAISEHPSLLLLIALLVAKIVATIAAIGLGIPGGLIGPLYGIGALIGAI 361

Query: 157 GRMISDIFRVKNEDTRHSLLAAGAAGGLAAAFNAPLAGIMFVIE 200
             ++S I               G    +    +APLA ++ ++E
Sbjct: 362 LALVSAILFPSIAPYVGLYTVIGMTAMMGVCLSAPLAALVALLE 405