Pairwise Alignments

Query, 468 a.a., ClC family H(+)/Cl(-) exchange transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 562 a.a., Chloride channel core (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  125 bits (314), Expect = 4e-33
 Identities = 109/437 (24%), Positives = 198/437 (45%), Gaps = 38/437 (8%)

Query: 35  FLSLLVGILAGLVGTYFEQAVHLVSETRTDWLKS------------EIGSFLPLWLAAFL 82
           F++L VGI AG     F + +H        WL++            +  + LP W    +
Sbjct: 39  FIALAVGIAAGFAALIFRKGIH--------WLQTMAYGHEDVRAVIDHAAGLP-WYWLVI 89

Query: 83  ISAFLAFIGYFLVHRFAPEAAGSGIPE-IEGA--MDGMRPVRWWRVLPVKFFGGMGALGS 139
           +      +   ++H F  +     + + IEG+   +G    R      V  +  +   GS
Sbjct: 90  VPTLGGLVVGLILHFFTDDGRVRSVADVIEGSALYEGRVEKRAGIASAVASWITLSTGGS 149

Query: 140 GMVLGREGPTVQMGGAVGRMISDIFRVKNEDTRHSLLAAGAAGGLAAAFNAPLAGIMFVI 199
               GREGP V +   +   +S+     +  T   LL    A  ++A+FNAP+AG +F +
Sbjct: 150 S---GREGPVVHLAAVISSWVSNRIHA-DGITGRDLLGCAVAAAVSASFNAPIAGALFAL 205

Query: 200 EEMRPQFRYTLISVRAVIISAVAANIVFRVINGQDAVITMPQYDAPELST-LGLFLLLGA 258
           E +   F   + +   ++I++ A  ++ R+  G     ++P+ +A      L  FLLLG 
Sbjct: 206 EVVLRHF--AVHAFAPIVIASAAGTVINRLEFGDVTEFSLPEANALAFYVELPAFLLLGL 263

Query: 259 LFGVFGVLFNYLITLAQDLFVKFHRNDRKRYLLTGSMIGGCFGLLLLYVPELTGGGISLI 318
           + G+  ++    +   +D      +       L  +  G   GLL ++ P + G G    
Sbjct: 264 VCGLVAIVLMKSVFWTEDFANHLQKVTGLPRYLRPAFAGVLLGLLAIWFPHIIGVGYE-- 321

Query: 319 PTITNGGYGAGIL---LLLFVGRIFTTLLCFGSGAPGGIFAPMLALGTLFGYAFGLIAKM 375
            T TN      +L   ++  + ++    +  G    GGIF+P L +G L G AFG+IA  
Sbjct: 322 -TTTNALTSQLLLHEAIVFAILKVVAVAITIGGRMGGGIFSPSLMVGALTGLAFGMIATG 380

Query: 376 WFPELNIEPGMFAIAGMGALFAATVRAPITGILLVIEMTNNYHLILPLII-TSLGAVIFA 434
            FP+++    ++A+AGMGA+ AA + API+  L+V E+T ++   L +++  SL   + +
Sbjct: 381 VFPDVSGSEALYALAGMGAVAAAVLGAPISTTLIVFELTGDWQTGLAVMVAVSLSTALAS 440

Query: 435 QLLGGQPIYSQLLHRTL 451
           +++      +QL  R +
Sbjct: 441 RVVDRSFFLTQLERRNV 457