Pairwise Alignments

Query, 468 a.a., ClC family H(+)/Cl(-) exchange transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 618 a.a., CLC voltage-gated chloride channel from Caulobacter crescentus NA1000

 Score =  108 bits (270), Expect = 5e-28
 Identities = 83/300 (27%), Positives = 132/300 (44%), Gaps = 15/300 (5%)

Query: 138 GSGMVLGREGPTVQMGGAVGRMISDIFRVKNEDTRHSLLAAGAAGGLAAAFNAPLAGIMF 197
           GSG  +G E    Q GGA    +     ++  D R  L+ AGA   +AAAF APL G  +
Sbjct: 164 GSGASVGLEAAYAQAGGATASWVGQRLNLRRGDLR-ILVGAGAGAAIAAAFGAPLTGAFY 222

Query: 198 VIEEMRPQFRYTLISVRAVIISAVAANIVFRVINGQDAVITMPQYDAPELSTLGLFLLLG 257
             E +     YT+ ++  V  +A+A  +V + +     ++          +   L+ LLG
Sbjct: 223 AFEIVIGA--YTVANIAPVAAAALAGVLVAKALGSTPYLLKTSVVAISSPADYALYGLLG 280

Query: 258 ALFGVFGVLFNYLITLAQDLFVKFHRNDRKRYLLTGSMIGGCFGLLLLYVPELTGGGISL 317
            L   FGV     + +A    +K       +  + G  +      L L  P+   GG   
Sbjct: 281 LLAAFFGVALMRAVAVADGWAIKAPLPRWSKPAIGGVALAA----LALATPQTLSGGHGA 336

Query: 318 IPTITNGGYGAGILLLLFVGRIFTTLLCFGSGAPGGIFAPMLALGTLFGYAFGLIAKMWF 377
           +    N      +LL+L + +   +++   SG  GG+F   L LG L G AF L+  M  
Sbjct: 337 LHLDLNSDLPLKVLLVLILMKAVASIVSLSSGFRGGLFFAALFLGVLMGQAFALVVNMTT 396

Query: 378 PELNIEPGMFAIAGMGALFAATVRAPITGILLVIEMTNNYHLILPLIITSLGAVIFAQLL 437
             ++++P   ++ GMGAL  A V  P T   LV+E+T ++        T  GA + A L+
Sbjct: 397 GTVHLDPIAASLVGMGALGVAIVGGPFTMSFLVLEVTGDF--------TVTGATLAASLI 448