Pairwise Alignments

Query, 468 a.a., ClC family H(+)/Cl(-) exchange transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 574 a.a., Cl- channel, voltage-gated family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  132 bits (332), Expect = 3e-35
 Identities = 87/311 (27%), Positives = 156/311 (50%), Gaps = 19/311 (6%)

Query: 129 KFFGGMGALGSGMVLGREGPTVQMGGAVGRMISDIFRVKNEDTRHSLLAAGAAGGLAAAF 188
           +FF  + ALG+   +GREGP + +G     ++++ F + +   R  + A+G A G+AA F
Sbjct: 131 QFFQALFALGTNFSVGREGPAIHLGAVSASVLAEKFNLPDNSVR-IMCASGIAAGIAATF 189

Query: 189 NAPLAGIMFVIEEMRPQFR--YTLISVRAVIISAVAANIVFRVINGQDA--VITMPQYDA 244
           NAPLA ++FV+E +  +++  Y    + + I  AV++ +VF  ++  D   VI +P    
Sbjct: 190 NAPLAAVIFVLEVIVREYKVHYFFPIMLSAICGAVSSQLVFGNVHEFDRIQVIHIPLDHY 249

Query: 245 PELSTLGLFLLLGALFGVFGVLFNYLITLAQDLFVKFHRNDRKRYLLTGSMIGGCFGLLL 304
           P L+  G+ L   A F      FNY +       +K     +   L+   ++ G    L+
Sbjct: 250 PILALGGIALGCAAAF------FNYAL-------LKVTATGQNWPLIYRLLLAGSITTLI 296

Query: 305 -LYVPELTGGGISLIPTITNGGYGAGILLLLFVGRIFTTLLCFGSGAPGGIFAPMLALGT 363
            L +P+  G G   I    +      +L+ L   +I  T+   G G PGG+  P+  +G 
Sbjct: 297 GLILPQALGTGDLAISEAISEHPSLLLLIALLAAKIIATIAAIGLGIPGGLIGPLYGIGA 356

Query: 364 LFGYAFGLIAKMWFPELNIEPGMFAIAGMGALFAATVRAPITGILLVIEMTNNYHLILPL 423
           L G    L++ + FP +    G++ + GM A+    + AP+  ++ ++EMTN+  +ILP 
Sbjct: 357 LIGAILALVSAILFPSIAPYVGLYTVIGMTAMMGVCLSAPLAALVALLEMTNDASIILPA 416

Query: 424 IITSLGAVIFA 434
           +  ++ A + A
Sbjct: 417 MFVTIPAFLIA 427



 Score = 34.3 bits (77), Expect = 1e-05
 Identities = 40/166 (24%), Positives = 63/166 (37%), Gaps = 18/166 (10%)

Query: 39  LVGILAGLVGTYFEQAVHLVSETRTDWLKSEIGSFLPLWLAAFLISAFLAFIGYFLVHRF 98
           L GI  G    +F  A+  V+ T  +W         PL     L  +    IG  L    
Sbjct: 254 LGGIALGCAAAFFNYALLKVTATGQNW---------PLIYRLLLAGSITTLIGLIL---- 300

Query: 99  APEAAGSGIPEIEGAMDGMRPVRWW-RVLPVKFFGGMGALGSGMVLGREGPTVQMG---G 154
            P+A G+G   I  A+     +     +L  K    + A+G G+  G  GP   +G   G
Sbjct: 301 -PQALGTGDLAISEAISEHPSLLLLIALLAAKIIATIAAIGLGIPGGLIGPLYGIGALIG 359

Query: 155 AVGRMISDIFRVKNEDTRHSLLAAGAAGGLAAAFNAPLAGIMFVIE 200
           A+  ++S I               G    +    +APLA ++ ++E
Sbjct: 360 AILALVSAILFPSIAPYVGLYTVIGMTAMMGVCLSAPLAALVALLE 405