Pairwise Alignments

Query, 686 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 951 a.a., BarA sensory histidine kinase (= VarS = GacS) from Pseudomonas fluorescens FW300-N2E2

 Score = 97.8 bits (242), Expect = 2e-24
 Identities = 119/533 (22%), Positives = 214/533 (40%), Gaps = 61/533 (11%)

Query: 184 IAKTFGAGIAHEMRNPLSALKTSIDVVRTMIPKPQTAAHTDYSLDAQELDLLHQILNEAD 243
           I   F A ++HE+R PL+ +     +++               L  ++LD L  I   AD
Sbjct: 319 IKSEFLANMSHEIRTPLNGILGFTHLLQKS------------ELTPRQLDYLGTIEKSAD 366

Query: 244 DVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVELEV-- 301
            ++   N  +D   + I+  ++   S    ++ D+++  +       A   H+ +LE+  
Sbjct: 367 SLLGIINEILDF--SKIEAGKLVLDSIP-FNLRDLLQDTLTIL----APAAHAKQLELVS 419

Query: 302 ----HQPFDFFGSDTLLTYALFNLLKNAFYYQKEHFSVCISIEQTSEHNLIRVR----DN 353
                 P    G    L   L NL+ NA  + +E   V  ++ +    + +++R    D 
Sbjct: 420 LVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDT 479

Query: 354 GVGIAPEMLEDIFRDFYTFGKN-----GSYGLGLPFCRKVMSAFGGTIRCASQQGQWTEF 408
           G+G++ + +  +F+ F     +     G  GLGL   ++++   GG I   S  G+ +EF
Sbjct: 480 GIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEGSEF 539

Query: 409 VLSF--PRYDSDTVNEIKTELLKTKSLIYIGSNQAIVRELNQLAVED------EFGFTAI 460
            +S   P+   D  +     LL  +  + +  N  + R+  Q  +ED       F     
Sbjct: 540 WISLRLPKTRDDAEDLPGPPLLGRR--VAVLENHELARQALQHQLEDCGLQVTPFNTLES 597

Query: 461 SAQQAVRRQDYEFEFDLILLDLDDATAQGELLPKLEGTLSFAEGCIGYVYDPGKTYAV-- 518
                      +   DL +L +       E L +    L    GC   V  P     +  
Sbjct: 598 LTNGITIAHQTDQAIDLAVLGITSNDMPPERLNQHIWDLEHL-GCKVLVLCPTTEQTLYH 656

Query: 519 ----NINRYLRIQPISIHSILRKPRKIIERLLFEQESLSMNRNVIPLQKSRHERRILVVD 574
               N +  L+ +P    +  RK R+ +  L+  + + S     +    S    ++L VD
Sbjct: 657 LSVPNPHSQLQAKP----ACTRKLRRALSDLVNPRPTRSDPHEPV----SSRAPKVLCVD 708

Query: 575 DNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIR 634
           DN +       LLE  G +V+    G   +K ++ +  DLVLMD++MP + G ++T  +R
Sbjct: 709 DNPANLLLVQTLLEDMGAKVLAVESGYAAVKAVQKETFDLVLMDVQMPGMDGRQSTEAVR 768

Query: 635 --NSEHEYKNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAW 685
              SE     +PI+  T          +  SGM+D++ KP     L   V  W
Sbjct: 769 QWESERHCTPLPIVALTAHAMANEKRALLQSGMDDYLTKPISERQLAQVVLKW 821