Pairwise Alignments

Query, 686 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 977 a.a., periplasmic sensor hybrid histidine kinase from Synechococcus elongatus PCC 7942

 Score = 94.4 bits (233), Expect = 2e-23
 Identities = 119/490 (24%), Positives = 207/490 (42%), Gaps = 63/490 (12%)

Query: 188 FGAGIAHEMRNPLSALKTSIDVVRTMIPKPQTAAHTDYSLDAQELDLLHQILNEADDVIY 247
           F A ++HE+R PL+A+   I     M+ + +     +     + L    +I N    ++ 
Sbjct: 481 FLANMSHELRTPLNAI---IGYSEMMMEEAEDGIEVE-----ELLPDFRKINNAGKHLLE 532

Query: 248 SGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVELEVHQPFDF 307
             N+ +DL         +   SF    +++ ++  +K    KN   Q+ + ++       
Sbjct: 533 LINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKN---QNQLLVDCPADIGL 589

Query: 308 FGSD-TLLTYALFNLLKNAFYYQKEHFSVCISIEQTSEHNLIRVRDNGVGIAPEMLEDIF 366
             +D T L   L NLL NA  +  +  ++ + +    +  + +V D+G+G++PE ++ IF
Sbjct: 590 MTADVTKLRQTLLNLLSNASKFTHQG-TIQLQVAAQGDQVVFKVVDSGIGMSPEQIDRIF 648

Query: 367 RDFY-----TFGKNGSYGLGLPFCRKVMSAFGGTIRCASQQGQWTEFVLSFPRY-----D 416
             F      T  K G  GLGL   R  +   GG I   S  G+ + F ++ PR       
Sbjct: 649 EAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPRQVQPPQS 708

Query: 417 SDTVNEIKTELLKTKSLIYIGSNQAIV---------RELNQLAVEDEFGFTAISAQQAVR 467
              V+ + T+     +      NQ +V         REL +  +E E G+  ++A     
Sbjct: 709 IPAVDPVLTDEAIATATEQEDQNQPVVLVVDDEPSARELLRRMLEKE-GYRVVTAAGGAE 767

Query: 468 --RQDYEFEFDLILLDLDDATAQG-ELLPKLEGTLSFAE---GCIGYVYDPGKTYAVNIN 521
             ++  E    LI LDL      G  +L  L+     AE     +  V     +YA+   
Sbjct: 768 GLQRAQELRPALITLDLMMPQVDGWSVLTALKADPMLAEIPVVMVSMVEGRSLSYALGAA 827

Query: 522 RYLRIQPISIHSILRKPRKIIERLLFEQESLSMNRNVIPLQKSRHERRILVVDDNQSIRT 581
            YL  +PI    +    R+I+ER               PL         LV++D+   R+
Sbjct: 828 DYLH-KPIDRDQL----RRILERYTHPDRQ--------PLA--------LVIEDDPVNRS 866

Query: 582 FTAILLEQQGYEVVQANDGSEVLKHMES--QNIDLVLMDIEMPNVGGLEATRLIRNSEHE 639
               LLE+ G++V +AN G + L  +ES  Q  DL+L+D+ MP + G      +R +   
Sbjct: 867 LLRQLLERDGWQVAEANQGQQGLAVLESLEQPPDLILLDLMMPQMDGFAFVDALR-ANGN 925

Query: 640 YKNIPIIGYT 649
           ++ +P+I  T
Sbjct: 926 WQTLPVIVVT 935



 Score = 54.7 bits (130), Expect = 2e-11
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 4/117 (3%)

Query: 562 QKSRHERRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEM 621
           Q+ +++  +LVVDD  S R     +LE++GY VV A  G+E L+  +     L+ +D+ M
Sbjct: 727 QEDQNQPVVLVVDDEPSARELLRRMLEKEGYRVVTAAGGAEGLQRAQELRPALITLDLMM 786

Query: 622 PNVGGLEATRLIRNSEHEYKNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVL 678
           P V G      ++ ++     IP++     +  +  +L    G  D++ KP DRD L
Sbjct: 787 PQVDGWSVLTALK-ADPMLAEIPVVMV---SMVEGRSLSYALGAADYLHKPIDRDQL 839