Pairwise Alignments

Query, 686 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1763 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  103 bits (258), Expect = 5e-26
 Identities = 118/519 (22%), Positives = 221/519 (42%), Gaps = 57/519 (10%)

Query: 188  FGAGIAHEMRNPLSALKTSIDVVRTMIPKPQTAAHTDYSLDAQELDLLHQILNEADDVIY 247
            F A ++HE+R P++A+          I   Q    T+  LD ++ + + +I   +  ++ 
Sbjct: 1040 FLANMSHEIRTPMNAI----------IGMSQLCLQTE--LDRKQRNYVEKIERASKSLLG 1087

Query: 248  SGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVELEVHQ--PF 305
              N+ +D       +  +    F+  ++   +E     F  K A  Q  +   V    P 
Sbjct: 1088 IINDILDFSKIEAGKLDIEVVPFQLDTI---LEDLGDMFSVKAADKQLELLFSVAPGVPT 1144

Query: 306  DFFGSDTLLTYALFNLLKNAFYYQKEHFSVCISIEQTSEHN-----LIRVRDNGVGIAPE 360
               G    L+  L NL+ NA  +  E   V +SI + +           VRD+G+G+  E
Sbjct: 1145 HLEGDPLRLSQVLINLMNNAIKFT-ERGEVMLSISELARDEDQVQLKFAVRDSGIGLTAE 1203

Query: 361  MLEDIFRDFY-----TFGKNGSYGLGLPFCRKVMSAFGGTIRCASQQGQWTEFVLSFPRY 415
                +F+ F      T  K G  GLGL  C++++   GG I   SQ G  + F  +    
Sbjct: 1204 QQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGEIGVDSQFGNGSTFYFTVSVK 1263

Query: 416  DSDTVNEIKTELLKTKSLIYIGSNQAIVRELNQLAVEDEFGFTAISAQQAVRRQDY--EF 473
             +        + L+  +++ +  N    R++ +  ++   GF+  SA+  +   +   E 
Sbjct: 1264 VAQNAQLNVEQELEGMAVLVVDDNST-ARDILRTTLQS-MGFSVDSARSGMEALEKCAER 1321

Query: 474  EFDLILLDLDDATAQGELLPKLEGTLSFAEGCIGYVYDPGKTYAVNINRYL----RIQPI 529
            ++ + L+D          +P+++GT + A   +  +  P     V+ +       +++ +
Sbjct: 1322 DYRIALIDWK--------MPEMDGTETAAR--MRELKQPPLILMVSAHANSEFIDKVEEM 1371

Query: 530  SIHSILRKPRKIIERL------LFEQESLSMNRNVIPLQKSRHE----RRILVVDDNQSI 579
             I+  + KP      L      L  Q    + R   P+   +      +RIL+V+DN+  
Sbjct: 1372 GINGYITKPISASRLLDGIMSALGRQGHKPVRRKAQPMDAQKLSGLKGKRILLVEDNEMN 1431

Query: 580  RTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIRNSEHE 639
            +   +  LEQ G  +  A++G   L+ +  Q+ DLVLMD +MP + G +ATR +R     
Sbjct: 1432 QEVASEFLEQVGVVLSIADNGQIALEKLGQQSFDLVLMDCQMPVMDGYQATRELRKLP-G 1490

Query: 640  YKNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVL 678
               +P++  T +       +   +GMND I KP +  +L
Sbjct: 1491 LAELPVVAMTANAMAGDKEMCLLAGMNDHIAKPIEVGIL 1529



 Score = 52.0 bits (123), Expect = 2e-10
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 5/114 (4%)

Query: 570  ILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEA 629
            +LVVDDN + R      L+  G+ V  A  G E L+    ++  + L+D +MP + G E 
Sbjct: 1281 VLVVDDNSTARDILRTTLQSMGFSVDSARSGMEALEKCAERDYRIALIDWKMPEMDGTET 1340

Query: 630  TRLIRNSEHEYKNIPIIGYTGDNS-PKTLALVQTSGMNDFIVKPADRDVLLNKV 682
               +R    E K  P+I     ++  + +  V+  G+N +I KP     LL+ +
Sbjct: 1341 AARMR----ELKQPPLILMVSAHANSEFIDKVEEMGINGYITKPISASRLLDGI 1390