Pairwise Alignments

Query, 686 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 941 a.a., hybrid sensory histidine kinase BarA (RefSeq) from Shewanella amazonensis SB2B

 Score =  108 bits (271), Expect = 9e-28
 Identities = 130/544 (23%), Positives = 234/544 (43%), Gaps = 53/544 (9%)

Query: 168 NLCFFRNQISHETKVSIAKTFGAGIAHEMRNPLSALKTSIDVVRTMIPKPQTAAHTDY-- 225
           N+   R +   +    I   F A ++HE+R PL+ +   I   R ++  P  ++  +Y  
Sbjct: 295 NIALDRAKKDAQEASRIKSEFLANMSHELRTPLNGV---IGFARQLLKTPLHSSQMEYIK 351

Query: 226 SLDAQELDLLHQILNEADDVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKT 285
           +++     LL QI+N+  D  +S   A  ++L ++      P   +  S+ D I     +
Sbjct: 352 TIERSATSLL-QIINDILD--FSKLEANKMVLETM------PFGLRA-SLEDTINLLAGS 401

Query: 286 FPYKNAADQHSVELEVHQPFDFFGSDTLLTYALFNLLKNAFYYQKE-HFSVCISIEQTSE 344
              K    +  V+++ + P +  G    L   + NLL NA  + +E    + IS+    +
Sbjct: 402 AHAKGL--EFVVDVDANVPENLSGDVMRLGQVMTNLLGNAIKFTEEGSVHLKISLASLED 459

Query: 345 HNLI---RVRDNGVGIAPEMLEDIFRDFYTFGKN-----GSYGLGLPFCRK-VMSAFGGT 395
           +NL     V D G+GI PE  E +F+ F     +     G  GLGL   ++ V+   GG 
Sbjct: 460 NNLTLRCEVTDTGIGIDPEQQELLFQAFGQADSSISRRYGGTGLGLVITKRLVVQMMGGR 519

Query: 396 IRCASQQGQWTEFVLSFPRYDSD--TVNEIKTELLKTKSLIYIGSNQAIVRELNQLAVED 453
           I   S+ G+ + F  + P   S     + +  E L   S++     +     + +   + 
Sbjct: 520 IGFHSEVGKGSSFWFTVPLQLSPFPVHDTLPLEKLIGHSVLLFEPRKLTRESIARKLKDW 579

Query: 454 EFGFTAISAQQAVRRQDYEFEFDLILLDLDDATAQGELLPKLE------GTLSFAEGCIG 507
               T  S +  + R   +  +D ILL      +  +L   L       G+L     C+ 
Sbjct: 580 HMMVTLASNEDELERHLDDRHYDAILLSGQSCESCEDLQRHLSRVKDHTGSLLLLNDCL- 638

Query: 508 YVYDPGKTYAVNINRYLRIQPISIHSILRKP---RKIIERLLFE--QESLSMNRNVIPLQ 562
              DP + Y   +  ++ +       +L+ P    K+ + L+F   +++ +    +    
Sbjct: 639 ---DP-EVYTQEMEPFVDL-------VLQLPVSELKLAQNLIFPPVKKNAAPKPALATKP 687

Query: 563 KSRHERRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMP 622
            +RH   +L VDDN +       LL++    VV  + G + +   +S++ DL+ MDI+MP
Sbjct: 688 SARHPLNVLAVDDNLANLKLIDTLLKELVANVVAVSSGDQAVALAKSRSFDLIFMDIQMP 747

Query: 623 NVGGLEATRLIRNSEHEYKNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKV 682
              G+ ATRLIR      +N PII  T     +    +Q SGM+ ++ KP D   L   +
Sbjct: 748 GTDGVTATRLIRQDSLN-RNTPIIAVTAHAINEERERIQASGMDGYLPKPIDEAALKGVI 806

Query: 683 AAWV 686
           + W+
Sbjct: 807 SRWL 810