Pairwise Alignments

Query, 686 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1287 a.a., signal transduction histidine kinase-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  107 bits (267), Expect = 4e-27
 Identities = 130/542 (23%), Positives = 219/542 (40%), Gaps = 83/542 (15%)

Query: 188  FGAGIAHEMRNPLSALKTSIDVV--RTMIPKPQTAAHTDYSLDAQELDLLHQILNEADDV 245
            F A ++HE+R P++A+   + +     + P+P+              D L +    A  +
Sbjct: 540  FLANMSHEIRTPMNAVLGLLQMTLQTELPPRPR--------------DYLEKTQQAAKSL 585

Query: 246  IYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVELEVHQ-- 303
            +   N+ +D          +    F    ++  +   + +        Q  +EL V+Q  
Sbjct: 586  LALLNDILDFSKIEAGRIELERQGFSLQQLLGDMGSILSS-----QVQQKDIEL-VYQVA 639

Query: 304  ---PFDFFGSDTLLTYALFNLLKNAFYY-QKEHFSVCISIEQTSE---HNLIRVRDNGVG 356
               P    G    L   L N+L NA  + +K      I  +   +   H  I ++D+G+G
Sbjct: 640  PSVPDQLIGDSLRLRQILLNVLTNAIKFTEKGDIITRIDADLGDDGTCHLHIEIQDSGIG 699

Query: 357  IAPEMLEDIFRDFYTFGKN-----GSYGLGLPFCRKVMSAFGGTIRCASQQGQWTEFVLS 411
            +  E    IF+ F     +     G  GLGL   R+++    G IR  S  G  + F + 
Sbjct: 700  MTNEQQAIIFKGFSQADSSISRRYGGTGLGLAITRELVHLMQGEIRVTSSPGVGSTFTID 759

Query: 412  F----------PRYDSDTVNEIKTELLKTKSLIYIGSNQAIVRELNQLAVEDEFGFTAIS 461
                       P      V  +  E   T  L++      ++R+L         G TA+ 
Sbjct: 760  VQLGFDATKYRPGARFSGVRVLLVEDNHTSRLVF----SELLRDLGCEVTALNNGLTAMK 815

Query: 462  AQQAVRRQDYEFEFDLILLDLDDATAQGELLPKLEGT--LSFAEGCIGYVYDPGKTYAVN 519
              + +        FD++L D          LP L+G    S+          PG      
Sbjct: 816  TIERMAPDS----FDVLLADWQ--------LPGLDGLELASWIRHLDSLSRQPGIIIVTA 863

Query: 520  INRYLR---------------IQPISIHSILRKPRKIIERLLFEQESLSMNRNVIPLQKS 564
             ++ +                I+P++   + R  + ++ER     + L M  + +PL  S
Sbjct: 864  FSQAMLEAQLKHREEEFDATLIKPVTREMVSRCLQSVLER--HNNDGLDMLSH-LPLAPS 920

Query: 565  RHERRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNV 624
               RR+L+V+DN + R     LL Q G EV++A DG + LK +  Q  DLVLMDI+MP +
Sbjct: 921  LVGRRLLLVEDNATNRLVATSLLGQLGAEVIEAVDGFQALKLLSRQQFDLVLMDIQMPGM 980

Query: 625  GGLEATRLIRNSEHEYKNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAA 684
             G + TR IRN E    ++PII  T +  P+     + +GMN  I KP + D +  K+  
Sbjct: 981  DGYQTTRKIRN-ELMLTDLPIIAMTANAMPEDKQACRDAGMNCHISKPFEIDEVATKLLQ 1039

Query: 685  WV 686
            ++
Sbjct: 1040 YL 1041