Pairwise Alignments

Query, 686 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 933 a.a., hybrid sensory histidine kinase BarA (RefSeq) from Shewanella loihica PV-4

 Score = 97.1 bits (240), Expect = 3e-24
 Identities = 119/531 (22%), Positives = 228/531 (42%), Gaps = 59/531 (11%)

Query: 184 IAKTFGAGIAHEMRNPLSALKTSIDVVRTMIPKPQTAAHTDYSLDAQELDLLHQILNEAD 243
           I   F A ++HE+R PL+ +   I   + ++  P  A+  DY         +  I   A 
Sbjct: 302 IKSEFLANMSHELRTPLNGV---IGFAKQLLKTPLHASQQDY---------IKTIEKSAT 349

Query: 244 DVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVELEVH- 302
           +++   N+ +D       +  +    F    V+D     +      N+A +  +EL V  
Sbjct: 350 NLLGIINDILDFSKLEAGKMELENMPFALREVIDDTISLLA-----NSAKEKDLELVVDI 404

Query: 303 QPF--DFFGSDTL-LTYALFNLLKNAFYYQKE---HFSVCISIEQTSEHNL-IRVRDNGV 355
           +P   D    D L ++  + NL+ NA  +      H  + ++ E+  + N+   + D G+
Sbjct: 405 EPSINDNVSGDALRVSQVITNLVGNAIKFTDSGSVHLKMRLTSEEAEKVNVRCEITDTGI 464

Query: 356 GIAPEMLEDIFRDFYTFGKN-----GSYGLGLPFCRKVMSAFGGTIRCASQQGQWTEFVL 410
           GI       +F+ F     +     G  GLGL   +++++  GG I C S  G+ + F  
Sbjct: 465 GIDKPHQAQLFQAFGQADSSISRRFGGTGLGLIITKRLINRMGGQIGCISAPGKGSTFWF 524

Query: 411 SFPRYDSD--TVNEIKTELLKTKSLIYIGSNQAIVRELNQLAVEDEFGFTAIS---AQQA 465
           + P   S       ++T+ L  K+++     + + R++++ ++   +G   IS   A+  
Sbjct: 525 TLPLKLSPYPISQPLETDNLIDKTVLLFEPRE-LSRKVHE-SLLSHWGMQNISITTAEDL 582

Query: 466 VRRQDYEFE-FDLILLDLDDATAQGELLPKLEGTLSFAEGCIGYVYDPGKTYAVNINRYL 524
            R    E   FD  ++  +D  +   LL  L      ++  +           +++    
Sbjct: 583 ARVAGEEGRHFDYAIISCNDLASSPNLLNVLNKIAKISDYTLYLCSSTDSAAKMSL---- 638

Query: 525 RIQPISIHSILRKPRKIIERLLF---------EQESLSMNRNVIPLQKSRHERRILVVDD 575
            IQP ++  +++ P  + ER L          + E++     V   Q+ R    +L VDD
Sbjct: 639 -IQP-NVDKVMQAP--VGERALAVTLINPHRAQYEAMPFQEAVKETQE-REPMSVLAVDD 693

Query: 576 NQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIRN 635
           N +       LL++   +V   ++G E ++  ++++ DL+ MDI+MP   G  AT+ IR 
Sbjct: 694 NPANLKLIKTLLKELVTQVTVTDNGQEAVEIAKAKSFDLIFMDIQMPGTDGFSATKQIR- 752

Query: 636 SEHEY-KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAW 685
            EH   +N PI+  T     +    +  SGM+ ++ KP D   L + ++ W
Sbjct: 753 -EHSLNRNTPIVAVTAHAIAEERERIDQSGMDGYLPKPIDEAALKSVISRW 802