Pairwise Alignments

Query, 686 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1230 a.a., PAS/PAC sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  103 bits (258), Expect = 4e-26
 Identities = 136/543 (25%), Positives = 237/543 (43%), Gaps = 84/543 (15%)

Query: 188  FGAGIAHEMRNPLSALKTSIDVVRTMIPKPQTAAHTDYSLDAQELDLLHQILNEADDVIY 247
            F A ++HE+R P++A+          I   Q A+ T   L  Q+ D L       D   +
Sbjct: 725  FLANMSHEIRTPMNAI----------IGMLQLASRTQ--LTPQQADYL-------DKAGF 765

Query: 248  SGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNA--ADQHSVELEVHQPF 305
            S  + + ++   +D +++     +   V   ++K +      NA  A +  VEL ++ P 
Sbjct: 766  SAQSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQEKGVELLLYAPV 825

Query: 306  D----FFGSDTLLTYALFNLLKNA--FYYQKEHFSVCISIEQTSEHNLIR--VRDNGVGI 357
                   G    L   L N+L NA  F    E    C  + +      ++  VRD G+GI
Sbjct: 826  TAGLILEGDPLRLGQVLINMLSNAVKFTQSGEIELGCEDVGERDHRITLKFWVRDTGIGI 885

Query: 358  APEMLEDIFRDFY-----TFGKNGSYGLGLPFCRKVMSAFGGTIRCASQQGQWTEFVLSF 412
            + E  E +F  F      T  K G  GLGL   + ++S  GGT++  S+ G  + F    
Sbjct: 886  SKEQQESLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVQSELGVGSTF---- 941

Query: 413  PRYDSDTVNEIKTELLKTKSLIY---IGSNQAIVRELNQLAVE------DEFGF---TAI 460
                S T++    E  + K LI    IG+ + +V + N  A++       +F F   TA 
Sbjct: 942  ----SFTISFEIAEEAEVKPLIVPEVIGNLKTLVVDDNPTALQIYSTAMRDFHFDVDTAS 997

Query: 461  SAQQAVRRQDYEFEFDLILLDLDDATAQG-ELLPKLEGTLSFAEGCI----------GYV 509
            +  +A+ + ++    DL+LLD       G E++  L+  +  A+G +           Y 
Sbjct: 998  NGAEALYKLEHR-PVDLLLLDWMMPEMDGVEVIKALDAMV--ADGRLEKRPVIIMMTAYA 1054

Query: 510  YDPGKTYAVNINRYLRIQPISIHSILRKPRK---IIERLL--FEQESLSMNRNVIPLQ-K 563
             +P K           +  + I+++L+KP K   + + ++  F  +        +P++  
Sbjct: 1055 SEPLKE---------DLDDLDIYAMLQKPFKASALFDEIIAAFIDKPKINPAAALPVEGN 1105

Query: 564  SRHERRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPN 623
            +    +IL+V+DN   +     LL+  GYEV  A +G   L  ++++  D VLMDI+MP 
Sbjct: 1106 ATGTGQILLVEDNFINQQVATELLKSAGYEVDVAENGQVALDMVDAKQYDAVLMDIQMPV 1165

Query: 624  VGGLEATRLIRNSEHEYKNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVA 683
            + GL AT+ +R   +  + +P+I  T             +GMN  I KP   + L + +A
Sbjct: 1166 MDGLTATKELR-KRYTKEELPVIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFDTLA 1224

Query: 684  AWV 686
             W+
Sbjct: 1225 QWI 1227