Pairwise Alignments

Query, 686 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 858 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  112 bits (280), Expect = 7e-29
 Identities = 135/536 (25%), Positives = 214/536 (39%), Gaps = 74/536 (13%)

Query: 188 FGAGIAHEMRNPLSALKTSIDVV--RTMIPKPQTAAHTDYSLDAQELDLLHQILN----E 241
           F A ++HE+R P + +   +D++    +  K +      Y    Q L +L+ IL+    E
Sbjct: 357 FLANMSHEIRTPFTGILGVLDLLLHTPLNEKQERYIRLAYGSTKQLLAILNDILDISKIE 416

Query: 242 ADDVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVELEV 301
           A  ++      +DL+L   +   V  A                      AA Q  +E   
Sbjct: 417 AGKLVIHPEE-VDLVLLLGELTEVQAA----------------------AAAQKGLEFRY 453

Query: 302 HQ----PFDFFGSDTLLTYALFNLLKNAFYYQKEHFSV----CISIEQTSEHNLIRVRDN 353
           H     P    G    L   + NLL NA  +    +      C  I    +H  + VRD+
Sbjct: 454 HIKGIIPPKIHGDPVRLRQIMANLLNNAIKFTNSGWVELDIECTRIAPGRQHLRVEVRDS 513

Query: 354 GVGIAPEMLEDIFRDFYTFGKN-----GSYGLGLPFCRKVMSAFGGTIRCASQQGQWTEF 408
           G+G+ PE+ E IF  F     +     G  GLGL  C++++    G+I  +S  G+ + F
Sbjct: 514 GIGVPPELQETIFDKFTQADSSTTRLFGGTGLGLTICKQLVELMHGSIGVSSNSGEGSCF 573

Query: 409 VLSFPRYDSD-TVNEIK--------TELLKTKSLIYIGSNQAIVRELNQLAVEDEFGFT- 458
                  +SD TV+ +         T L +   ++ +   +A    L +   +       
Sbjct: 574 WFDIELPESDPTVSPVPVLPAGSPITALPRDTRILLVDDTEANREVLAEYLAQAHCQVRQ 633

Query: 459 AISAQQAVRRQDYEFEFDLILLDLDDATAQGELLPKL----EG----TLSFAEGCIGYVY 510
           A +  +AV   +  ++ D IL+D   A   G    +     EG    T   A        
Sbjct: 634 AANGLEAVTLAE-SWQPDAILMDCQMAGMDGYEATRQIRIQEGQRRRTPIIALTAFVMRG 692

Query: 511 DPGKTYAVNINRYLRIQPISIHSILRKPRKIIERLLFEQESLSMNRNVIPLQKSRHERRI 570
           D  K  A  ++ YL  +P+   +++    K +E            R   P +  R   RI
Sbjct: 693 DREKCLAAGMDDYLP-KPVDAQTLIATIGKWLE-----------GRETNPARTPRFSGRI 740

Query: 571 LVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEAT 630
           L+VDDN  IR  +  LLE  G +V  A+ G E L+     + DLVLMD  MP + G   T
Sbjct: 741 LLVDDNPEIREASTCLLEALGCQVQSASSGEEALQLGPEADFDLVLMDCRMPGLDGCATT 800

Query: 631 RLIRNSEHEYKNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAWV 686
           R  R  E       II  T  +  ++ A  + +GMNDF+ KP     L+  +  W+
Sbjct: 801 RAWRARERGTPT-AIIALTAGDPDESRAQCREAGMNDFLAKPFSEQELVTLLRRWL 855