Pairwise Alignments

Query, 686 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1279 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score = 95.9 bits (237), Expect = 1e-23
 Identities = 112/527 (21%), Positives = 213/527 (40%), Gaps = 47/527 (8%)

Query: 188  FGAGIAHEMRNPLSALKTSIDVVRTMIPKPQTAAHTDYSLDAQELDLLHQILNEADDVIY 247
            F A ++HE+R P++A+          I     A  TD  LD ++ + L +I + +  ++ 
Sbjct: 539  FLANMSHEIRTPMNAV----------IGMTHLALKTD--LDERQREYLRKIQHSSQHLLG 586

Query: 248  SGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVELEVHQPFDF 307
              N+ +D   +   +  +    F    V++ +   +         +   +E+    P   
Sbjct: 587  IINDILDFSKSEAGKLHIEQIDFDLEKVLEDVSSLMSERATSKGLE-FVIEMADEVPRHL 645

Query: 308  FGSDTLLTYALFNLLKNAFYY-QKEHFSVCISIEQTSEHNLI---RVRDNGVGIAPEMLE 363
             G    +   L N   NA  + ++   ++ + +E+     ++    V D G+GI    L 
Sbjct: 646  VGDPLRIGQVLINYASNAVKFTERGEVAIHVGLEEDQGQEVLLRFAVHDTGIGIKAGELP 705

Query: 364  DIFRDFY-----TFGKNGSYGLGLPFCRKVMSAFGGTIRCASQQGQWTEFVLSFPRYDSD 418
             +F  F      T  K G  GLGL   +++    GG +   S+ G+ + F  +     S 
Sbjct: 706  TLFNSFQQADSSTTRKYGGTGLGLVIAKRLAELMGGQVGAESEPGRGSTFWFTARLGRSS 765

Query: 419  TVNEIKTEL--LKTKSLIYIGSNQA-------IVRELNQLAVEDEFGFTAISAQQAVRRQ 469
                       L+T+ L+ +  +         ++R ++    + + G   ++  Q  R  
Sbjct: 766  NARHRAPPRPDLRTRRLLVVDDHDHARDVVCDMLRSMSFQVSDTDSGNRCLAELQ--RAS 823

Query: 470  DYEFEFDLILLDLD----DATAQGELLPKLE------GTLSFAEGCIGYVYDPGKTYAVN 519
                 +D++ LD      D  A    + +LE        +  A G        G++    
Sbjct: 824  AAGEPYDIVFLDWQMPEMDGLATAREIRRLELPQPPLVLMITAYGRDELARSAGESGLQG 883

Query: 520  INRYLRIQPISIHSILRKPRKIIERLLFEQESLSMNRNVIPLQKSRHERRILVVDDNQSI 579
            I   L I+P+S   +     +I++    +    + +   +P        R+L+V+DNQ  
Sbjct: 884  IEEIL-IKPVSPSQLFNTVMRILDHE--DGPHSAADPEALPDLAPLAGLRVLLVEDNQLN 940

Query: 580  RTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIRNSEHE 639
            +   +  L      V  A+DG+  L+ +  Q  D++LMD++MP + G+ ATR IR  +  
Sbjct: 941  QEVASEFLAGANMVVDVADDGASALEKVRQQRYDVILMDMQMPVMDGIAATREIRR-QFP 999

Query: 640  YKNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAWV 686
               +PI+  T +   +       +GMND I KP D   LL K+  W+
Sbjct: 1000 AAVLPILAMTANAMEQDRERCLAAGMNDHIAKPVDPRDLLGKLLKWL 1046