Pairwise Alignments

Query, 686 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1306 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score = 97.8 bits (242), Expect = 3e-24
 Identities = 123/544 (22%), Positives = 227/544 (41%), Gaps = 54/544 (9%)

Query: 173  RNQISHETKVSIAKTFGAGIAHEMRNPLSALKTSIDVVRTMIPKPQTAAHTDYSLDAQEL 232
            R + + E        F A ++HE+R P++A+          I     A  T+  L  ++ 
Sbjct: 567  RARATAEEATEAKSLFLANMSHEIRTPMNAI----------IGMAHLAMKTE--LTPKQR 614

Query: 233  DLLHQILNEADDVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAA 292
            D + +I N A  ++   N+ +D   + I+  ++S   +   S+ DV++        K  A
Sbjct: 615  DYVGKIHNAAISLLGIINDILDF--SKIEAGKLS-LEYVPFSLEDVLDNVSGLLGLK--A 669

Query: 293  DQHSVEL----EVHQPFDFFGSDTLLTYALFNLLKNAFYYQKEHFSVCIS---IEQTSEH 345
            ++  +EL        P    G    L   L NL+ NA  +  E   + ++   ++Q  + 
Sbjct: 670  NEKGLELLFNVNAGTPAGLVGDPLRLNQILTNLVSNAIKFT-ERGQITLTTRPVDQAGDR 728

Query: 346  NLIR--VRDNGVGIAPEMLEDIFRDFY-----TFGKNGSYGLGLPFCRKVMSAFGGTIRC 398
              ++  + D G+G++ E L  +F+ F      T  K G  GLGL   R+++   GGTI  
Sbjct: 729  VKLQFWIEDMGIGMSREQLLHLFQAFTQADGSTTRKYGGTGLGLSISRRLVEMMGGTIWA 788

Query: 399  ASQQGQWTEFVLSFPRYDSDTVNEIKTELLKTKSL-IYIGSNQAIVRELNQLAVE----- 452
             S  G+ + F  +     ++ +   +T       L + +  +    RE+   A+      
Sbjct: 789  DSTLGEGSTFCFTAWFGRAEELARPRTLPASLAGLRVLVADDNGAAREILGEALRHLDLR 848

Query: 453  -DEFGFTAISAQQAVRRQDYEFEFDLILLDLDDATAQG-ELLPKLEGTLSFAEG-----C 505
             D     A +  Q    Q     + ++ LD       G   L KL+  L  A+       
Sbjct: 849  PDLVASGAEALAQLTEMQGGADPYRVLFLDWQMPDLDGVSTLHKLQQALPQAQWPRVVMV 908

Query: 506  IGYVYDPGKTYAVNINRY-LRIQPISIHSILRKPRKIIERLLFEQESLSMNRNVIPLQKS 564
              Y  +  +    N+    + ++P+S  ++      ++  L+    + +   ++   Q  
Sbjct: 909  TAYDQEELRRQTENLGICGILVKPVSASTLF----DVLVSLVDADNAPATPLHIAAPQTR 964

Query: 565  RHERRILVVDDNQSIRTFTAILLEQQGYEVVQANDGS---EVLKHMESQNIDLVLMDIEM 621
                RIL+ +DN+  +     LL+  G +V  A DG    E+L+     + DLVLMD++M
Sbjct: 965  IDGMRILLAEDNEINQQIAVELLQSMGAQVTVAGDGLQAVELLERSPDDSFDLVLMDLQM 1024

Query: 622  PNVGGLEATRLIRNSEHEYKNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNK 681
            P++ G +AT  +R  +  + ++PI+  T    P+        GMND + KP D   L   
Sbjct: 1025 PHLDGYDATERLR-CQQRFAHLPILAMTAHAMPEERERCLAIGMNDHLAKPIDPTALAAT 1083

Query: 682  VAAW 685
            +A W
Sbjct: 1084 LARW 1087