Pairwise Alignments

Query, 686 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1689 a.a., sensory transduction histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  105 bits (261), Expect = 2e-26
 Identities = 130/529 (24%), Positives = 214/529 (40%), Gaps = 63/529 (11%)

Query: 188  FGAGIAHEMRNPLSALKTSIDVVRTMIPKPQTAAHTDYSLDAQELDLLHQILNEADDVIY 247
            F A ++HE+R P++A+          I     A  TD  L  +  D + ++   A  ++ 
Sbjct: 959  FLANMSHEIRTPMNAI----------IGMSYLALQTD--LAEKRKDYIAKVHQAAGSLLN 1006

Query: 248  SGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVELEVHQPFDF 307
              N+ +D      ++  V    F    V+  +   +  F  +  + +   ++    P  F
Sbjct: 1007 IINDILDFSKIEANKLTVEHIEFDLDEVLTQLNNVIG-FKVEENSMRLIYDIATDCPRYF 1065

Query: 308  FGSDTLLTYALFNLLKNAFYYQKEHFSVCISIEQTSEHN----LIRVRDNGVGIAPEMLE 363
             G    L   L N   NA  +  +   + +S +   +         V D+G+GI  +   
Sbjct: 1066 IGDPQRLGQILLNYCNNAVKFSPKGSDILLSCQAELDKQGATLTFCVADDGIGIPLDKQA 1125

Query: 364  DIFRDFY-----TFGKNGSYGLGLPFCRKVMSAFGGTIRCASQQGQWTEFVLSFPRYDSD 418
             +F  F      T  K G  GLGL  C+++     G + C S+ GQ + F L        
Sbjct: 1126 RLFHSFEQGDTSTSRKYGGTGLGLAICKRLSELMQGEVWCESELGQGSRFYLRLH----- 1180

Query: 419  TVNEIKTELLKTKSLIYIGSNQAIVRELNQLAVEDEFGFTAISAQQAVR--RQDYEFEFD 476
             +  +K   L T+     G + +IV  +  L+        AI ++ A R   Q    E  
Sbjct: 1181 -LPLVKPYDLSTQFAALQGESLSIVGFMPDLS--------AIYSRFAARVGMQARTLEMH 1231

Query: 477  LILLDLDDATAQGELLPKLEGTLSFAEGCIGYVYDPGKTYAVNINRYLRIQPISIHS--- 533
            + L +L   T+Q  ++ +   T +F    +  V    K   + I      +P++I S   
Sbjct: 1232 MALAELSACTSQHLIMCE---TNAFEPELLSVVLANDKLGLLLIGN--GSEPVAIQSLVD 1286

Query: 534  ----ILRKPRKIIERLLFEQESLSMNRNVIPL-QKSRHER-----------RILVVDDNQ 577
                I+ K   I+ R L E   L +NR+  P  Q   H+             +L+V+DN 
Sbjct: 1287 KHPQIIAKQHPILLRTLGESLLLLLNRDRAPFGQHLEHQSITTLKNQLAGVELLLVEDNY 1346

Query: 578  SIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIRNSE 637
              +     LL Q G  V  A  G E L  +  Q+ D VLMD +MP + G EATRLIR ++
Sbjct: 1347 LNQELAVELLRQAGARVTVAQHGQEALTLLAQQSFDCVLMDGQMPVMDGYEATRLIR-AQ 1405

Query: 638  HEYKNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAWV 686
             ++ ++PII  T +           +GMN  I KP     L + +A  V
Sbjct: 1406 PQFADLPIIAMTANAMDSDRERALAAGMNAQINKPFQVQQLYSTIAQHV 1454