Pairwise Alignments

Query, 686 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  107 bits (268), Expect = 4e-27
 Identities = 125/523 (23%), Positives = 225/523 (43%), Gaps = 64/523 (12%)

Query: 188  FGAGIAHEMRNPLSALKTSIDVVRTMIPKPQTAAHTDYSLDAQELDLLHQILNEADDVIY 247
            F A ++HE+R P++A+          I   Q    T   LD ++ + L +I   +  ++ 
Sbjct: 1043 FLANMSHEIRTPMNAI----------IGMSQLCLQTQ--LDKKQKNYLEKIERASQSLLS 1090

Query: 248  SGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVEL----EVHQ 303
              N+ +D       +  +   SF+  ++++ +        +   A Q  +EL      + 
Sbjct: 1091 IINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDM-----FSERAAQKQIELLFAVAPNV 1145

Query: 304  PFDFFGSDTLLTYALFNLLKNAFYYQKEHFSVCIS---IEQTSEHNLIR--VRDNGVGIA 358
            P    G    L   L NL+ NA  +  E   V +S   +EQ ++  ++R  VRD+G+G+ 
Sbjct: 1146 PRHLLGDPLRLGQVLINLMNNAIKFT-ERGEVLLSLSLVEQQNDDVVLRFSVRDSGIGLT 1204

Query: 359  PEMLEDIFRDFY-----TFGKNGSYGLGLPFCRKVMSAFGGTIRCASQQGQWTEFVLSFP 413
             E    +F+ F      T  K G  GLGL   ++++   GG+I   SQ G  + F  +  
Sbjct: 1205 QEQQSKLFKSFTQADTSTTRKYGGTGLGLAISKQLVELMGGSIGVESQLGHGSTFFFTVK 1264

Query: 414  RYDSDTVNEIKTELLKTKSLIYIGSNQAIVRELNQLAVEDEFGF---TAISAQQAVRRQD 470
               S        + L   S++ +  + A  R++ +  +E   GF   T  S  +A+ R  
Sbjct: 1265 LCISSGQKLFVGQELDGMSIL-VADDNATARDIMRTTLES-MGFNVDTVRSGDEAIMRCS 1322

Query: 471  YEFEFDLILLDLDDATAQGELLPKLEGTLSFAEGCIGYVYDPGKTYAV----NINRYLRI 526
             + E+ + L+D          +P L+G +  A+       +  +   V    N +   +I
Sbjct: 1323 QQ-EYAVALIDWK--------MPNLDG-IETAKQIKQQTKNAPRILMVSAHANQDFLTQI 1372

Query: 527  QPISIHSILRKPRKIIERLLFEQESLSMNRNVIPLQKSRHE-----------RRILVVDD 575
            + + +   + KP     RLL    +      ++P+++ +             +RIL+V+D
Sbjct: 1373 EQLGLAGYISKPISA-SRLLDGIMNALGRSGILPVRRHQDNIAPELLLPLKGKRILLVED 1431

Query: 576  NQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIRN 635
            N+         LEQ G  +  A +G   L  +  Q+ DLVLMD +MP + G +AT+ IR 
Sbjct: 1432 NEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGYQATKAIR- 1490

Query: 636  SEHEYKNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVL 678
               E   +P+I  T +       +   +GMND I KP + ++L
Sbjct: 1491 QRPELAQLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLL 1533



 Score = 53.1 bits (126), Expect = 1e-10
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 570  ILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEA 629
            ILV DDN + R      LE  G+ V     G E +     Q   + L+D +MPN+ G+E 
Sbjct: 1284 ILVADDNATARDIMRTTLESMGFNVDTVRSGDEAIMRCSQQEYAVALIDWKMPNLDGIET 1343

Query: 630  TRLIRNSEHEYKNIP-IIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKV 682
             + I+    + KN P I+  +   +   L  ++  G+  +I KP     LL+ +
Sbjct: 1344 AKQIK---QQTKNAPRILMVSAHANQDFLTQIEQLGLAGYISKPISASRLLDGI 1394