Pairwise Alignments

Query, 686 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1188 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  105 bits (263), Expect = 1e-26
 Identities = 130/532 (24%), Positives = 224/532 (42%), Gaps = 60/532 (11%)

Query: 188  FGAGIAHEMRNPLSALKTSIDVVRTMIPKPQTAAHTDYSLDAQELDLLHQILNEADDVIY 247
            F A ++HE+R P++A+          I   Q A  T  SL AQ+ D L +    A  ++ 
Sbjct: 677  FLANMSHEIRTPMNAI----------IGMLQLAQRT--SLTAQQKDYLEKAGFSAQSLLR 724

Query: 248  SGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVELEVHQPFD- 306
              N+ +D       +  +    F    V+D    A+     K  A +  VEL ++ P   
Sbjct: 725  IINDILDFSKIEAGKLELERVPFPLDKVLD---HALDLNALK--AQEQGVELLLYAPVTA 779

Query: 307  ---FFGSDTLLTYALFNLLKNA--FYYQKEHFSVCISIEQTSEHNLIR--VRDNGVGIAP 359
                 G    L   L NLL NA  F    E    C  + +      ++  VRD G+GI+ 
Sbjct: 780  GLILKGDPLRLGQVLINLLSNAVKFTQSGEIELGCEDVGERDHRITLKFWVRDTGIGISK 839

Query: 360  EMLEDIFRDFY-----TFGKNGSYGLGLPFCRKVMSAFGGTIRCASQQGQWT--EFVLSF 412
            +  E +F  F      T  K G  GLGL   + ++S  GG ++  S+ G  +   F +SF
Sbjct: 840  DQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTISF 899

Query: 413  PRYDSDTVNEIKT-ELLKTKSLIYIGSNQAIVRELNQLAVEDEFGF-TAISAQQAVRRQD 470
               +   +  +   E L     + +  N   ++  + L  +  F   TA S  +A+ +  
Sbjct: 900  EIAEEAKIEPLVVPEKLNNLRTLVVDDNPTALQIYSALMRDFHFEVDTAASGAEALYKLS 959

Query: 471  YEFEFDLILLDLDDATAQGELLPKLEGT--LSFAEGCIGYVYDPGKTYAVNINRYL---- 524
             +   DL+LLD         ++P+++G+  +S  +  +       +   + +  Y     
Sbjct: 960  RD-PIDLLLLDW--------MMPEMDGSDVISAIDTMVAEGRIAKRPIIIMMTAYAAEPL 1010

Query: 525  --RIQPISIHSILRKPRKI------IERLLFEQESLSMNRNV--IPLQKSRHERRILVVD 574
               +   ++ ++L+KP K       I     ++  L++ + +  + +++  H   +L+V+
Sbjct: 1011 LHEVDSANVFAVLQKPFKASSLFDEIIAAFADEPRLNVVQPIAEVAVEEGEHTGLVLLVE 1070

Query: 575  DNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIR 634
            DN   +     LL+  GYEVV A +G   L  ++S+  D VLMDI+MP + GL A R +R
Sbjct: 1071 DNFINQQVATELLKSAGYEVVVAGNGQIALDIVDSRPFDAVLMDIQMPVMDGLTAARALR 1130

Query: 635  NSEHEYKNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAWV 686
               +    +PII  T             +GMN  I KP     L   +  W+
Sbjct: 1131 -ERYSADVLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLTHWI 1181