Pairwise Alignments

Query, 686 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

 Score = 95.5 bits (236), Expect = 2e-23
 Identities = 133/534 (24%), Positives = 230/534 (43%), Gaps = 56/534 (10%)

Query: 179  ETKVSIAKTFGAGIAHEMRNPLSALKTSIDVVRTMIPKPQTAAHTDYSLDAQE--LDLLH 236
            +T  +    F A ++HE+R P++A+   + +++      Q   +   +  A +  L LL+
Sbjct: 894  DTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSVQQQGYVTKAQTAAKSLLGLLN 953

Query: 237  QILNEADDVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHS 296
             IL+ +   I +G   +DL   SI+      A              V +  + N+  +  
Sbjct: 954  DILDFSK--IDAGKLKLDLHPCSIELLMRDLA-------------VVLSANHGNSDVEVM 998

Query: 297  VELEVHQPFDFFGSDTLLTYALFNLLKNAFYYQKEHFSV----CISIEQTSEHNLIRVRD 352
             +L+   P         L   L NL  NA  +      +    C+  E  S      + D
Sbjct: 999  FDLDSALPAWLLADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESVTVQFSIVD 1058

Query: 353  NGVGIAPEMLEDIFRDFY-----TFGKNGSYGLGLPFCRKVMSAFGGTIRCASQQGQWTE 407
            +G+GI+ E +E IF  F      T  + G  GLGL   ++++   GG ++  S+ G  + 
Sbjct: 1059 SGIGISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVGSR 1118

Query: 408  FV--LSFPRYDSDTVNEIKTELLKTKSLIYIGSNQAIVRELNQLAVEDEFGF---TAISA 462
            F   L+FP  + +         L    ++ +  NQ     L+++    ++G    TA   
Sbjct: 1119 FWFDLTFPVMEVEANPRAD---LSGYRILVVDDNQITTEILSKIL--SDYGCVVETASGG 1173

Query: 463  QQAVRRQDYEF----EFDLILLDLD----DATAQGELLPKLEGTLSFAEGCIGYVYDPGK 514
             QA+ +         +FD++L+D      D     E+L K  GT S+    +       +
Sbjct: 1174 YQAIEKVKQATANAQQFDVVLMDWRMPDIDGLQTAEML-KNAGTGSYTPLVVMLTAYGHE 1232

Query: 515  TYAVNINRYLRIQPISIHSILRKP---RKIIERLLFEQESLSMNRNVIPL-QKSRHERRI 570
              A + +    I  +   + L KP   + + E +L   E  +M+ N  P  Q+      +
Sbjct: 1233 VIAESQH----INNVPFVNFLTKPVTSQILAEAVLNAIEGKTMDANPKPRSQRLLAGLTL 1288

Query: 571  LVVDDNQSIRTFTAILLEQQGYEVVQANDGSE-VLKHMESQNI-DLVLMDIEMPNVGGLE 628
            LVV+DNQ  R     LL  +G  VV A  G E V + ++S ++ D V+MD++MP++ GLE
Sbjct: 1289 LVVEDNQLNREVIDELLTYEGATVVLAEGGIEGVTQVLDSGDMFDAVIMDMQMPDIDGLE 1348

Query: 629  ATRLIRNSEHEYKNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKV 682
            ATR IR ++  +  +PI+  T + S         +GMN  + KP D   LL  +
Sbjct: 1349 ATRRIR-ADGRFDQLPILAMTANASQADKQECLEAGMNAHVSKPIDMQQLLPNI 1401