Pairwise Alignments

Query, 686 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1119 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

 Score =  105 bits (261), Expect = 2e-26
 Identities = 115/526 (21%), Positives = 226/526 (42%), Gaps = 55/526 (10%)

Query: 184 IAKTFGAGIAHEMRNPLSALKTSIDVVRTMIPKPQTAAHTDYSLDAQELDLLHQILNEAD 243
           +   F A ++HE+R+PL+A+   ++++           H + + +A    LLH I     
Sbjct: 497 VKSRFLATMSHEIRSPLNAILGGVELLLDSSLSKDQRIHANIAREAGSA-LLHTI----- 550

Query: 244 DVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVELEVHQ 303
                 N+ +D       +  +    F+   +V  + + ++   ++   +  S  +  + 
Sbjct: 551 ------NDILDFSKIEAGQMVLESHEFEPDKLVAQVLQILEPKAFEKGLELVSF-VNRNV 603

Query: 304 PFDFFGSDTLLTYALFNLLKNAFYYQKEHFSVCISIE-------QTSEHNLIRVRDNGVG 356
           P    G    L   L NL+ NA  +     S  I++E       QT      RV D+G+G
Sbjct: 604 PRTVVGDQQRLRQVLHNLVDNAIKFTA---SGTITVEMWIPDNHQTEVQLYCRVTDSGIG 660

Query: 357 IAPEMLEDIFRDFYTFGK--NGSY---GLGLPFCRKVMSAFGGTIRCASQQGQWTEFVLS 411
           I+ E    +F++F       N +Y   GLGL  C ++++  GGTI   S+ GQ + F   
Sbjct: 661 ISAEAQSKLFKEFSQVHDTHNTNYKGTGLGLAICSELITMMGGTIELQSELGQGSRFTF- 719

Query: 412 FPRYDSDTVNEIKTELLKTKSLIYIGSNQA-----IVRELNQLAVE--DEFGFTAISAQQ 464
           +        N   +      S + +  + A     + ++ +Q  VE  +   + +I   +
Sbjct: 720 YVSLQLLEGNFCHSHYFPAHSRVLLAHHDATWLSLVSKQYSQYGVETVEVMDWPSIKRAK 779

Query: 465 AVRRQDYEFEFDLILLDLD---DATAQGELLPKLEGTLSFAEGCIGYVYDPGKTYAVNIN 521
            ++ Q     F+LILLD     D   Q   + +L      A+G +  +     T   +  
Sbjct: 780 KIKGQ-----FNLILLDEGFFLDVNEQD--VNRLRQAHLTADGSMVALVSGMSTEITH-- 830

Query: 522 RYLRIQPISIHSILRKP-RKIIERLLFEQESLSMNRNVIPLQKSRHERRILVVDDNQSIR 580
               +  + +  ++ KP  + ++  L  +++L+       + + + +  IL+ +D+ + +
Sbjct: 831 ---SLATLGLDQVVNKPLSRAMQLALLSKDALANEFEEEYVAQEKFQGHILLAEDSPANQ 887

Query: 581 TFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIRNSEHEY 640
                +L + G+++  A +G E +K +  +  DLVLMD+ MP + GLEAT +I  +  E 
Sbjct: 888 IIAGTMLTKAGFDITYACNGLEAVKLVAEKPFDLVLMDVRMPEMDGLEATEVILQNHPEQ 947

Query: 641 KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAWV 686
               I+  + +   + +      GM DFI KP  +  LL+ +  W+
Sbjct: 948 ---VILAMSANVMKEEIEHCYRVGMKDFIAKPVKQKTLLHAIQKWL 990