Pairwise Alignments
Query, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056
Subject, 1213 a.a., Exonuclease SbcC from Pseudomonas fluorescens FW300-N2E2
Score = 166 bits (420), Expect = 9e-45
Identities = 235/940 (25%), Positives = 386/940 (41%), Gaps = 152/940 (16%)
Query: 189 ERALFERAAGIRKEKEEFDQQIKGTLSVVGLESEEQLQTELTELAPVLTHAQSQLKAEQQ 248
+R F R + ++ E QI+ + + L + EL L AQ L + +Q
Sbjct: 307 QRHQFIRQTELNRQLEPLTAQIQQLT-----QQQIDLHAQQAELEKALDDAQQALASARQ 361
Query: 249 QWDETKAHYQAALELEQQFIRKQQLVVEIATHQEQA---------THIEMLRQQRQQAQK 299
Q ++ + A + R Q A QEQA T +L QQRQ A++
Sbjct: 362 QSIDSAPLLRQAFGEQSTLARLAQDANLSAERQEQAQQACTEGQRTIDTLLEQQRQVAER 421
Query: 300 AARLT-AVHQQWHQAQKNLQQAKLKVEQQQTLLQQAKAQQQQAQQAS--QQASLACEEVP 356
R+ A+ Q H A + + QQ +L + Q QA+ A+ Q A+ A EE
Sbjct: 422 LQRIADALEQSTHLAPLSDAWNAYRDRLQQLMLIGNRLNQGQAELATLEQSATRAAEE-- 479
Query: 357 KLNEQRITWQRAEQKLLAQENVQQAVAKAERELQLATQNALNLQQ--ASEKL------EQ 408
+ +R + ++L +E + A AE+ L T N +Q A E L +Q
Sbjct: 480 ------LATRRQDLEVLYKEAGAEPQAVAEQIQLLGTLLQDNRKQLRAFEDLTRLWASQQ 533
Query: 409 ELQNQRLEWEQ-QQRQLTRLEVQKARMNQLVQQVQAREREQSLLNELQTAQQALLRFEQQ 467
EL + E EQ QQR L + + ++ E+ ++ EL Q+ +
Sbjct: 534 ELDKRGAELEQRQQRALQERDRLVREGGEAKAELTIAEQTLTVTRELLERQRLARSESVE 593
Query: 468 HHHIQTQAEQAKLTADKLEFAWHTQRAAELALA-LTQNEPCPVCGSLEHPN------KAQ 520
Q Q EQ +E +H A L + E +++ N + Q
Sbjct: 594 QLRAQLQDEQPCPVCGSVEHPYHQPEALLENLGRFDETEEANARKAVDLLNEKVIDLRTQ 653
Query: 521 YSGDVVT----KVQVEQARQQQQD------------------------WVQRQQEAFH-- 550
YSG + K Q EQ QQQ W+ +Q H
Sbjct: 654 YSGVIAQLKELKQQQEQLASQQQSLAPSLEAHPLSAQLLAQDSNKRDTWLAQQNSQLHQH 713
Query: 551 ---------------------AWQQQGFKT--EQIAQNLTTLSSELTLQQVALLNELIEQ 587
A Q + +T +Q AQ L+ EL + L +EL
Sbjct: 714 ISQDEQRQTALLTLQQDAARLAQQLRDAETASQQAAQQLSNQQQELARDRQRLDDELSHF 773
Query: 588 QQILHSDI---------AALQQLNPDLLKR--QIEEGEQRLAHT---KMTLEKQNQNQQQ 633
+L +D A QL+ + +R Q+E+ L+ + TLEK+ QQ
Sbjct: 774 SALLPADTLQALRTEPAATFMQLDQQIAQRLEQLEQQRDELSEQLQRQQTLEKEQDRQQT 833
Query: 634 AWQTLAQLQAELASL-------RQEIPPELSDLDTLRSAIGRVQNQIEILQKAEHTAREQ 686
Q L ++ + ++L +Q++ L + + ++ ++E + AE TA +Q
Sbjct: 834 RLQQLEAVRLQFSALSEQQQACQQQLTQLLGEHTSAEQWQQQLDQRLEQTRDAEATANQQ 893
Query: 687 WVQAQKQFASVQAAYQAAIEAHRESQRQQEETTSAWQQGLL-HSGFSDESAYLAARLTDE 745
Q + + A +A E R +++ + Q H D + L D+
Sbjct: 894 LQQLRNDLVQLAAELKARQEQARSLDLERQALAAGIAQWRTSHPELDDAALEALLGLDDQ 953
Query: 746 AIVNIERQIAQ----YEERSAMLSGEQQALSRKLAEKNRPEL-EPLLVKVTQAEEKMALA 800
+ + +++ E+ +L+ +Q L A+ N L E L +T+ + + A +
Sbjct: 954 HVSQLRQRLLNSEKAIEQARVLLTEREQRLQNHQAQHNGNLLPEQLAEALTELQGQFAAS 1013
Query: 801 LQAFTQ-------HQSRMDGLQRVAKQLADLYQKNRALEAEYQVVGTLSDIANGKTGAKV 853
Q + Q R + Q +A+Q+ Y EYQ L + TG +
Sbjct: 1014 EQRCAELRAEQAEDQRRQNANQALAQQIEQAY-------IEYQRWARLDALIGSATGDR- 1065
Query: 854 SLHRFVLGVLLDDVLLQASQRLMKMSRGRYLLKRKEERAKGNVGSGLDLMVEDSYSG-KW 912
+ LD ++ A+ +L ++ R RY LKR GS L L+V D+ G +
Sbjct: 1066 -FRKLAQAYNLDLLVHHANAQLRQLVR-RYRLKRG--------GSMLGLLVMDTEMGDEL 1115
Query: 913 RDVATLSGGESFMAALSLALGLSDVVQAYSGGIRLDTLFIDEGFGSLDPESLDLAIQTLI 972
R V +LSGGE+F+ +L+LALGL+ + S +++++LFIDEGFGSLDPESL LA+ L
Sbjct: 1116 RSVHSLSGGETFLVSLALALGLASMA---SSTLKIESLFIDEGFGSLDPESLQLAMDALD 1172
Query: 973 DLQQGGRTIGIISHVTELKEQIGLRLDVLATRMGSTLRLI 1012
LQ GR + +ISHV E+ E+I +++ V R G+ L +
Sbjct: 1173 GLQAQGRKVAVISHVQEMHERIPVQIQV--RRQGNGLSTV 1210
Score = 154 bits (388), Expect = 5e-41
Identities = 220/885 (24%), Positives = 374/885 (42%), Gaps = 109/885 (12%)
Query: 1 MRPLKLILQAFGPFAGREEIDFTK--LGDAPLFLINGATGAGKSSILDAICYALYGETTG 58
M+ L + L+ AG EIDFT L A LF I G TGAGKS++LDA+C AL+G
Sbjct: 1 MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAVPR 60
Query: 59 SERTGDQMRCDYAAPESLT----------------EVIFEFELAGARYQITRQPDQEIPK 102
TG + E T EV F + G RY+ + ++ K
Sbjct: 61 LNNTGRDAKVPDVDGEIATGDPRTLLRRGTGDGYAEVDFR-GIDGRRYRARWEANRAREK 119
Query: 103 KRGEGMTKKSHSATLVALKSDGNELIANKPNPVAKAVVELMGLDVKQFRQVMVLPQGKFR 162
G+ + L D ++L+A++ + +GL+ +QF + ++L Q +F
Sbjct: 120 AGGKLQASRQSLRDL-----DNDQLLASQKGEYKTQLETALGLNFEQFTRAVLLAQSEFS 174
Query: 163 ELLTANSKEREQIFGQLFQTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVGLESE 222
L A+ ER ++ +L T LY+++ R F++A ++ ++ Q G ++ + E+
Sbjct: 175 AFLKADDNERSELLEKLTDTALYTRLGRRAFDKAKHAKETHKQLQDQATG-VTPLAPEAR 233
Query: 223 EQLQTELTELAPVLTHAQSQLKAEQQQWDETK-------AHYQAALELEQQFIRKQQLVV 275
+L TE L Q+QLK +QQ + H AA +L+Q Q
Sbjct: 234 AELDQRFTEAQLQLKAQQAQLKQLEQQHTWLRDLGLLQDEHASAAEQLQQ----AQADWN 289
Query: 276 EIATHQEQATHIEMLRQQRQQAQKAARLTAVHQQWHQAQKNLQQAKLKVEQQQTLLQQAK 335
+A + + +E L QR Q + L + + L Q ++ + QQ L++A
Sbjct: 290 ALADERLKLVRLEQLAPQRHQFIRQTELNRQLEPLTAQIQQLTQQQIDLHAQQAELEKAL 349
Query: 336 AQQQQAQQASQQASLACEEVPKLNEQRITWQRAEQKLLAQENVQQAVAKAERELQLATQN 395
QQA +++Q S+ + P L + EQ LA+ Q A AER+ Q A Q
Sbjct: 350 DDAQQALASARQQSI--DSAPLLRQ-----AFGEQSTLAR-LAQDANLSAERQEQ-AQQA 400
Query: 396 ALNLQQASEKLEQELQNQRLEWEQQQRQLTRLEVQKARMNQLVQQVQA-REREQSLL--- 451
Q+ + L L+ QR E+ QR LE Q + L A R+R Q L+
Sbjct: 401 CTEGQRTIDTL---LEQQRQVAERLQRIADALE-QSTHLAPLSDAWNAYRDRLQQLMLIG 456
Query: 452 NELQTAQQALLRFEQQHHHIQTQAEQAKLTADKLEFAWHTQRAAELALALTQNEPCPVCG 511
N L Q L EQ AE+ LE + A A+A E + G
Sbjct: 457 NRLNQGQAELATLEQS---ATRAAEELATRRQDLEVLYKEAGAEPQAVA----EQIQLLG 509
Query: 512 SLEHPNKAQYSG-DVVTKVQVEQARQQQQ--DWVQRQQEAFHAWQQQGFKTEQIAQNLTT 568
+L N+ Q + +T++ Q ++ + QRQQ A + +++ +
Sbjct: 510 TLLQDNRKQLRAFEDLTRLWASQQELDKRGAELEQRQQRALQ-------ERDRLVREGGE 562
Query: 569 LSSELTL--QQVALLNELIEQQQILHSDIAALQQLNPDLLKRQIEEGEQRLAHTKMTLEK 626
+ELT+ Q + + EL+E+Q++ S+ +++QL L +++ ++E
Sbjct: 563 AKAELTIAEQTLTVTRELLERQRLARSE--SVEQLRAQL-------QDEQPCPVCGSVEH 613
Query: 627 QNQNQQQAWQTLAQL-QAELASLRQEIPPELSDLDTLRSAIGRVQNQIEILQKAEHTARE 685
+ + L + + E A+ R+ + + LR+ V Q++ L+
Sbjct: 614 PYHQPEALLENLGRFDETEEANARKAVDLLNEKVIDLRTQYSGVIAQLKELK-------- 665
Query: 686 QWVQAQKQFASVQAAYQAAIEAHRESQR------QQEETTSAWQQGLLHSGFSDESAYLA 739
Q Q+Q AS Q + ++EAH S + + +T A Q LH S +
Sbjct: 666 ---QQQEQLASQQQSLAPSLEAHPLSAQLLAQDSNKRDTWLAQQNSQLHQHISQDEQRQT 722
Query: 740 ARLT-DEAIVNIERQIAQYE----ERSAMLSGEQQALSR---KLAEKNRPELEPLLVKVT 791
A LT + + +Q+ E + + LS +QQ L+R +L ++ L
Sbjct: 723 ALLTLQQDAARLAQQLRDAETASQQAAQQLSNQQQELARDRQRLDDELSHFSALLPADTL 782
Query: 792 QA--EEKMALALQAFTQHQSRMDGLQRVAKQLADLYQKNRALEAE 834
QA E A +Q Q R++ L++ +L++ Q+ + LE E
Sbjct: 783 QALRTEPAATFMQLDQQIAQRLEQLEQQRDELSEQLQRQQTLEKE 827
Score = 71.6 bits (174), Expect = 3e-16
Identities = 141/562 (25%), Positives = 237/562 (42%), Gaps = 71/562 (12%)
Query: 131 KPNPVAKAVVELMGLDVKQFRQVMVLPQGKFRELLTANSKEREQIFGQLFQTQLYSQIER 190
+P VA+ + +L+G ++ R+ + + R L A+ +E ++ +L Q Q + ER
Sbjct: 497 EPQAVAEQI-QLLGTLLQDNRKQLRAFEDLTR--LWASQQELDKRGAELEQRQQRALQER 553
Query: 191 ALFERAAGIRKEKEEFDQQIKGTLSVVG----------LESEEQLQTELTELAPVLT--- 237
R G K + +Q TL+V ES EQL+ +L + P
Sbjct: 554 DRLVREGGEAKAELTIAEQ---TLTVTRELLERQRLARSESVEQLRAQLQDEQPCPVCGS 610
Query: 238 -----HAQSQLKAEQQQWDETK-AHYQAALEL--EQQFIRKQQLVVEIATHQEQATHIEM 289
H L ++DET+ A+ + A++L E+ + Q IA +E E
Sbjct: 611 VEHPYHQPEALLENLGRFDETEEANARKAVDLLNEKVIDLRTQYSGVIAQLKELKQQQEQ 670
Query: 290 LRQQRQQ-----------AQKAARLTAVHQQW-HQAQKNLQQAKLKVEQQQTLL---QQA 334
L Q+Q AQ A+ + W Q L Q + EQ+QT L QQ
Sbjct: 671 LASQQQSLAPSLEAHPLSAQLLAQDSNKRDTWLAQQNSQLHQHISQDEQRQTALLTLQQD 730
Query: 335 KA----QQQQAQQASQQASLACEEVPKLNEQRITWQRAEQKLLAQENVQQAVAKAERELQ 390
A Q + A+ ASQQA+ +L+ Q+ R Q+L + + A+ A+
Sbjct: 731 AARLAQQLRDAETASQQAA------QQLSNQQQELARDRQRLDDELSHFSALLPADTLQA 784
Query: 391 LATQNALNLQQASEKLEQ---ELQNQRLEWEQQQRQLTRLEVQKARMNQLVQQVQARERE 447
L T+ A Q +++ Q +L+ QR E +Q ++ LE ++ R +QQ++A +
Sbjct: 785 LRTEPAATFMQLDQQIAQRLEQLEQQRDELSEQLQRQQTLEKEQDRQQTRLQQLEAVRLQ 844
Query: 448 QSLLNELQTA-QQALLRFEQQHHHIQTQAEQAKLTAD-KLEFAWHTQRAAELALALTQNE 505
S L+E Q A QQ L + +H T AEQ + D +LE + A L +N+
Sbjct: 845 FSALSEQQQACQQQLTQLLGEH----TSAEQWQQQLDQRLEQTRDAEATANQQLQQLRND 900
Query: 506 PCPVCGSLEHPNKAQYSGDVVTKVQVEQARQQQQDWVQRQQEAFHAWQQQGFKTEQIAQ- 564
+ L+ + S D+ + Q + + A A G + ++Q
Sbjct: 901 LVQLAAELKARQEQARSLDLERQALAAGIAQWRTSHPELDDAALEA--LLGLDDQHVSQL 958
Query: 565 NLTTLSSELTLQQVALL----NELIEQQQILHSDIAALQQLNPDL--LKRQIEEGEQRLA 618
L+SE ++Q +L + ++ Q H+ +QL L L+ Q EQR A
Sbjct: 959 RQRLLNSEKAIEQARVLLTEREQRLQNHQAQHNGNLLPEQLAEALTELQGQFAASEQRCA 1018
Query: 619 HTKMTLEKQNQNQQQAWQTLAQ 640
+ + ++Q +Q A Q LAQ
Sbjct: 1019 ELRAE-QAEDQRRQNANQALAQ 1039