Pairwise Alignments

Query, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 1217 a.a., hypothetical protein from Pseudomonas stutzeri RCH2

 Score =  228 bits (582), Expect = 2e-63
 Identities = 313/1239 (25%), Positives = 503/1239 (40%), Gaps = 278/1239 (22%)

Query: 1    MRPLKLILQAFGPFAGREEIDFTK--LGDAPLFLINGATGAGKSSILDAICYALYGETT- 57
            M+ L + L+     AG + IDFT   L  A LF I G TGAGKS+ILDA+C AL+G T  
Sbjct: 1    MKILAIRLKNLASLAGEQVIDFTTEPLASAGLFAITGPTGAGKSTILDALCLALFGSTPR 60

Query: 58   -------------------GSERTGDQMRCDYAAPESLTEVIFEFELAGARYQITRQPDQ 98
                               G ER   +  C     E +  V  +     AR+++ R    
Sbjct: 61   LDSVSPLNKVPDVEAEIGGGDERNLLRRGCGAGFAE-VDFVGVDGHRYRARWEVKRA--- 116

Query: 99   EIPKKRGEGMTKKSHSATLVALKSDGNELIANKPNPVAKAVVELMGLDVKQFRQVMVLPQ 158
               +++ +G  + S S +L  L S G  L + K     + +   +GL + QF + ++L Q
Sbjct: 117  ---REKVDGRLQAS-SQSLTDLDS-GTLLASGKKREFKELLEARLGLTLAQFTRAVLLAQ 171

Query: 159  GKFRELLTANSKEREQIFGQLFQTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVG 218
             +F   L A+  ER  +  +L  T LYS++ +A FE A   ++     +QQ  G L  + 
Sbjct: 172  SEFSAFLKADDNERGTLLEKLTDTGLYSRLGQAAFEAAKQAKESLTRLEQQAGG-LQPLE 230

Query: 219  LESEEQLQTELTELAPVLTHAQSQLKA--EQQQW--------DETKAHYQAALELEQQ-- 266
             E  + L+ E       L   Q QLK    Q+QW        +E +A  Q   + E +  
Sbjct: 231  PEQRDVLEREHQAQLEELKKLQQQLKELEAQRQWLSELQRLENEREAARQQLQDAEDERE 290

Query: 267  ---------------------FIRKQQLVVEIATHQEQATHIEMLRQQRQQAQKAAR--- 302
                                 F+R+Q+L   +    E  T ++   Q  QQ   + +   
Sbjct: 291  SLTAARRILDLFELLAPQRHRFLRQQELEPLLGKAAESLTRLQHEAQSLQQRLDSLQRQC 350

Query: 303  ------LTAVHQQWHQAQKNLQQAKLKVEQQQTLLQQAKAQQQQAQQASQQASLACEEVP 356
                  L A  Q    A+  L QA+ + E+   L     + ++++ QA   AS     + 
Sbjct: 351  EAAGNDLRAAEQARQTAEPRLAQARREEERLSHLNADLASIREESAQADAAASAGEATLK 410

Query: 357  KLNEQRITWQRAEQKL--LAQENVQQAVAKA--------ERELQLATQNALNLQQASEKL 406
            +L +Q+   QRA ++L  L Q+    A  +            LQ A Q A  LQQ   +L
Sbjct: 411  QLGDQQ---QRAAEQLATLTQQLETSAALQPLCVAWGGYRPRLQQAVQLAARLQQGQSEL 467

Query: 407  ------------EQELQNQRLEWEQQQRQLTR-LEVQKARMNQLVQQVQAREREQSLLNE 453
                        +Q L  + L+  Q++R     L  Q A +++ + + +  ERE   L +
Sbjct: 468  PALQAQAEAAESQQSLAREALDNLQRERDSELGLAEQLAGLHRQLDEWRQAERETDALQQ 527

Query: 454  LQTAQ---------------------QALLRFEQQHHHIQTQAEQA-KLTADKLEFAW-- 489
            L   Q                      +L+   +Q  + +  AEQA K+T   LE     
Sbjct: 528  LWAQQLTLTASQHELSNANSRQQAELDSLVPLGKQVRNDRDAAEQALKVTLALLERQRLA 587

Query: 490  HTQRAAELALALTQNEPCPVCGSLEHPNKAQYS-------GDVVTKVQVEQARQQQQDWV 542
             ++    L  +L   EPCPVCGS EHP +   +        D       +QA Q+Q   +
Sbjct: 588  RSENVEALRASLVPGEPCPVCGSDEHPWQQTDALVASLDRHDDSEAAHAQQALQEQDQRL 647

Query: 543  QRQQEAFHAWQQQGFKTEQIAQNLTTLSSELTLQQVALL--NELIEQQQILHSDIAALQQ 600
            Q  ++   A   Q  +T+Q    +      L  + +AL     L+EQ +   S     Q 
Sbjct: 648  QELRDRHVALSTQLRQTQQRQSEVELQLQALAPRLLALPVHTRLLEQPEAERSQWLETQL 707

Query: 601  LNPDLLKRQIEEGEQRLAHTKMTLEKQNQNQQQAWQTLAQLQAE----LASLRQEIPPEL 656
             N   LK QI    QR     + L+++++  QQAWQ   +   E    LA  R  +  + 
Sbjct: 708  TN---LKDQIASASQRQQQL-LALQQRSETLQQAWQAAREACVEATQQLARQRDALARDS 763

Query: 657  SDLDTLRSAIGRVQNQIEILQKAEHTAREQWVQAQKQFAS----VQAAYQAAIEAHRESQ 712
              LD    A   +   +E LQ+      + ++Q     A+    +QA  + A E  +  Q
Sbjct: 764  QQLDEELLAFAELL-PVEQLQRWRENPAQTFMQLDASIATRLQQLQAQTELAEELRQCEQ 822

Query: 713  RQQEE----------------------------------------TTSAWQQGLLHSGFS 732
            R+ +E                                        + SAWQQ L      
Sbjct: 823  RRSDEQLQQRHRQEKQASCSARLSEREKLLLACQQALRTSLGEQSSASAWQQQL------ 876

Query: 733  DESAYLAARLTDEAI-----------VNIERQIAQYEERSAMLSGEQQALSRKLAE--KN 779
             ++A   AR    AI             +  +     +R A L+ E+ AL+ +LA    +
Sbjct: 877  -DAAIQTARQAQTAIDQQLNESKLGLTRLHSEQQNCRQRHAELAQERDALNAELASWRAD 935

Query: 780  RPELEPLLVK---------VTQAEEKMALALQAFTQHQSRMDGL---------------- 814
             P+L+   +          + +A +++     + T+ + R+DG                 
Sbjct: 936  HPQLDDASLAQLLHMDDQLIAEARQRLRENSDSLTRCRERLDGCLNRLNLHKQQQSDAPD 995

Query: 815  -----QRVAKQLADLYQKNR---------------------------ALEAEYQVVGTLS 842
                 QR A+QL    Q ++                           A  AE+Q  G ++
Sbjct: 996  TEQLQQRYAEQLQQCEQADQRCAETRAQLIDDDKRRSQSQALLTQIDAARAEHQRWGRIA 1055

Query: 843  DIANGKTGAKVSLHRFVLGVLLDDVLLQASQRLMKMSRGRYLLKRKEERAKGNVGSGLDL 902
             +     G   +  +      LD ++  A+ +L +++R RY LKR         GS L L
Sbjct: 1056 ALIGSSDGG--AFRKIAQAYNLDLLVQHANVQLRQLAR-RYRLKRG--------GSPLGL 1104

Query: 903  MVEDSYSG-KWRDVATLSGGESFMAALSLALGLSDVVQAYSGGIRLDTLFIDEGFGSLDP 961
            +V D+  G + R V +LSGGE+F+ +L+LALGL+ +    S  +++++LFIDEGFGSLDP
Sbjct: 1105 LVLDTEMGDELRSVHSLSGGETFLVSLALALGLASMA---SSKLKIESLFIDEGFGSLDP 1161

Query: 962  ESLDLAIQTLIDLQQGGRTIGIISHVTELKEQIGLRLDV 1000
            ESL +A+  L  LQ  GR + +ISHV E+ E+I +++ V
Sbjct: 1162 ESLQIAMDALDSLQAQGRKVAVISHVAEMHERIPVQIRV 1200