Pairwise Alignments

Query, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 1214 a.a., exonuclease SbcC from Pseudomonas syringae pv. syringae B728a

 Score =  241 bits (616), Expect = 2e-67
 Identities = 321/1249 (25%), Positives = 509/1249 (40%), Gaps = 276/1249 (22%)

Query: 1    MRPLKLILQAFGPFAGREEIDFTK--LGDAPLFLINGATGAGKSSILDAICYALYGETTG 58
            M+ L + L+     AG  EIDFT   L  A LF I G TGAGKS++LDA+C AL+G    
Sbjct: 1    MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAIPR 60

Query: 59   SERTGDQMRCDY------AAPESL---------TEVIF---EFELAGARYQITRQPDQEI 100
                G     D       + P +L          EV F   +     AR++  R  D   
Sbjct: 61   LSNIGQSKVPDIDGDITTSDPRTLLRRGTGSGYAEVDFIGIDQRRYRARWETNRARDNA- 119

Query: 101  PKKRGEGMTKKSHSATLVALKSDGNELIANKPNPVAKAVVE-LMGLDVKQFRQVMVLPQG 159
                    TKK  ++       D  ++++N+     + ++E  +GL+ +QF + ++L Q 
Sbjct: 120  --------TKKLQASRQTLTDLDSEQILSNQSKREFEQLIENRLGLNFEQFTRAVMLAQS 171

Query: 160  KFRELLTANSKEREQIFGQLFQTQLYSQIERALFERA----------------------- 196
            +F   L A+ KER ++  +L  T +YSQ+ R  + ++                       
Sbjct: 172  EFSAFLKADDKERSELLEKLTNTAIYSQLGRRAYSKSKEAEDALKTLTAQASNIIPLAPE 231

Query: 197  --AGIRKEKEEFDQQIKGTLSVVG-LESEEQLQTELTELAPVLTHAQSQLKAEQQQWDET 253
              A + +   +  QQ+K   +    LE ++Q  TEL  L      AQ  L + QQ WDE 
Sbjct: 232  LLAELEQRLSDAQQQLKAHQTQQRQLEIKQQWLTELHRLRDEQLAAQEALNSAQQAWDEH 291

Query: 254  KAHYQAALELEQ------QFIRK-------QQLVVEIATHQEQATHIEMLRQQRQQAQKA 300
                Q   +LE+      +F R+         L  +I  HQ Q T +   +QQ +  +  
Sbjct: 292  SGARQTLGQLERLGPQRHRFARRVTLNAQLDPLAEQIRQHQRQQTSLHDQQQQLESRRTQ 351

Query: 301  ARLTAVH-QQWHQAQKNL-------------------------QQAKLKVEQQQTLLQQA 334
            A+ + +  QQ H + K L                         QQ++    Q +T LQ  
Sbjct: 352  AQTSLLEAQQAHSSAKPLLLQAFEAQNTLNHLAQELAKASDLHQQSEQLCIQGKTSLQTL 411

Query: 335  KAQQQQAQQASQQASLACEEVPKLNEQRITWQRAEQKLLAQENVQQAVAKAERELQLATQ 394
              QQQQ  Q  ++ +   +   +L      W     +L +   +   +     EL     
Sbjct: 412  LDQQQQVAQRLERIAGQLQHSSELAPLAQAWNAWRDRLKSLTLIANRLKHGHSELPA--- 468

Query: 395  NALNLQQASEKLEQELQNQRLEWEQQQRQLT-RLEVQKARMNQLVQQVQAREREQSLLNE 453
                LQQ ++  +Q+L  QR   E   R+    +E    ++  L   +Q   ++Q    E
Sbjct: 469  ----LQQRAKTADQQLTEQRSALELLYREADCEVEAVTEQVQILGSLLQDNRKQQRAFEE 524

Query: 454  L-------QTAQQALLRFEQQHHHIQTQAEQAKLTA----DKLEFAWHT----------Q 492
            L       Q   + L    QQ    Q Q EQ         D+L  A  T          Q
Sbjct: 525  LARLWASQQDVDRQLADLSQQQQSAQQQREQLNSEGLRVRDELTVAEQTLTVTRQLLERQ 584

Query: 493  RAA------ELALALTQNEPCPVCGSLEHP-------------------NKAQYSGDVVT 527
            R A      EL + L  ++PCPVCGS+EHP                     AQ + D++T
Sbjct: 585  RLARSASVEELRVQLQDDQPCPVCGSIEHPWHQPEALLESLTQHDDNEQASAQKAVDLLT 644

Query: 528  KVQVEQARQQQQDWVQRQQEAFHAWQQQGFKTEQIAQNLTT--LSSELT----------- 574
            + Q  Q R+Q    + RQ+E     +Q   + + +A +L +  L+++L            
Sbjct: 645  E-QRNQLREQVGGVIARQKELLRQHEQLTVRHQALAPDLESHPLAAQLLDRDADKRDGWL 703

Query: 575  LQQVALLNELI---EQQQ----ILHSDIAALQQ----------------------LNPD- 604
             QQ++ L+E+I   EQ+Q     L  D A LQQ                      L  D 
Sbjct: 704  SQQLSQLSEVISRDEQRQQALLTLQKDAARLQQQLQAATEASQTAAGHVAEQLKQLEADG 763

Query: 605  ------------LLKRQIEEG------------EQRLAHTKMTLEKQNQNQQQAWQTLAQ 640
                        L+  Q+ EG            EQ++      LE+Q++ QQ+  QT  Q
Sbjct: 764  QRLEEELTAFTPLVSPQVLEGLRSDASATVLQLEQQVTQRLDQLEQQHEEQQE--QTERQ 821

Query: 641  LQAELASLRQEIPPELSDLDTLRSAIGRVQNQIEILQKA------EHTAREQWVQAQKQF 694
             + E   + Q+    L     L   + R+  Q +  Q+       +H + EQW QA +Q 
Sbjct: 822  QKIEKQQVEQQT--RLHRQTELAQELTRLGEQQQTSQQTLAGLLGDHASAEQWQQALEQT 879

Query: 695  A-----SVQAAYQAAIEAHRE---------SQRQQEETT-----------SAWQQGLLHS 729
                  +   A QA  + H +         S +QQ+++            S W+    H 
Sbjct: 880  IDQARQAESLAAQALQDIHNQLIQLAAELKSGQQQQQSLQQELAELDVQISEWRAQ--HP 937

Query: 730  GFSDESAYLAARLTDEAIVNIERQIAQ----YEERSAMLSGEQQALSRKLAE-KNRPELE 784
               D +        D  +  +  Q+       E+   +L    Q L +  A+  +  +  
Sbjct: 938  QLDDSALDTLLTYDDAHVEQLRVQLNSTDKALEQAKVLLQERDQRLQQHQAQHSDLTDSA 997

Query: 785  PLLVKVTQAEEKMALALQAFTQHQSRMDGLQRVAKQLADLYQKNRALEAEYQVVGTLSDI 844
             L   + QA E+ AL+ Q     ++ +   QR     ++L  +     +EY     L+ +
Sbjct: 998  QLATALQQALEQSALSEQHCADLRAELSEDQRRRNANSELQARIADANSEYLRWARLASL 1057

Query: 845  ANGKTGAKVSLHRFVLGVLLDDVLLQASQRLMKMSRGRYLLKRKEERAKGNVGSGLDLMV 904
                 G +    +      LD ++  A+ +L ++ R RY LKR         GS L L+V
Sbjct: 1058 IGSAEGDR--FRKIAQAYNLDLLVHHANAQLRQLVR-RYRLKRG--------GSMLGLLV 1106

Query: 905  EDSYSG-KWRDVATLSGGESFMAALSLALGLSDVVQAYSGGIRLDTLFIDEGFGSLDPES 963
             D+  G + R V +LSGGE+F+ +L+LALGL+ +    S  +R+++LFIDEGFGSLDPES
Sbjct: 1107 MDTEMGDELRSVHSLSGGETFLVSLALALGLASMA---SSTLRIESLFIDEGFGSLDPES 1163

Query: 964  LDLAIQTLIDLQQGGRTIGIISHVTELKEQIGLRLDVLATRMGSTLRLI 1012
            L LA+  L  LQ  GR +G+ISHV E+ E+I +++ V   R G+ L  I
Sbjct: 1164 LQLAMDALDGLQAQGRKVGVISHVQEMHERIPVQIKV--RRQGNGLSTI 1210